Sulfuriferula sp. AH1: CAP31_11680
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Entry
CAP31_11680 CDS
T04857
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sulf
Sulfuriferula sp. AH1
Pathway
sulf03030
DNA replication
sulf03410
Base excision repair
sulf03420
Nucleotide excision repair
sulf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAP31_11680 (ligA)
03410 Base excision repair
CAP31_11680 (ligA)
03420 Nucleotide excision repair
CAP31_11680 (ligA)
03430 Mismatch repair
CAP31_11680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulf03032
]
CAP31_11680 (ligA)
03400 DNA repair and recombination proteins [BR:
sulf03400
]
CAP31_11680 (ligA)
Enzymes [BR:
sulf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAP31_11680 (ligA)
DNA replication proteins [BR:
sulf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAP31_11680 (ligA)
DNA repair and recombination proteins [BR:
sulf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAP31_11680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAP31_11680 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAP31_11680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAP31_11680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
SnoaL_2
HHH_3
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ARU32275
LinkDB
All DBs
Position
complement(2312362..2314395)
Genome browser
AA seq
677 aa
AA seq
DB search
MASVAIKERISALREQLEYHNYRYYVLDAPEVSDAEYDRLFRELQALEQQYPELIIPVSP
TQRIGGTALTEFTQVTHTTPMLSLNNAFSDDEVVAFDRRVREASDLPTIEYAVEPKFDGL
AISLVYENGQLVSGATRGDGYVGEDVTANLRTIRAIPLSLTLANPPARMEIRGEVLMLKS
DFAALNRSQREQGLKEFANPRNAAAGSLRQLDSRITATRGLHFFAYGVGQCEGGVLPATH
GEVMNQLMVWHMPVAQERAVVQGVDGLLAYYRQMGAARDSLAFDIDGVVYKVNDLALQQR
IGYVARAPRFAIAHKFPAQEATTQLLDIDVQVGRTGALTPVARLAPVAVGGVTVTNATLH
NEDEIRRKGVLIGDWVNVRRAGDVIPEVVSVVTSRRPQDAREFVMPVVCPVCGSHVVRLP
DEAVARCTGGLFCPAQRKQALWHFASRRALDIDGLGEKLIEQLVDAGLVNNPADLYRLGL
LSLVNLERMAEKSASNLLAAIEHSKHTTLARFIYALGIRHVGEQTAKDLARYFGKLETMM
AADETQLQQVPEVGEVVAKSIVQFFAEPHNLTVISLLRAAGVCWDETVPVSVKHGSIAGK
VFVITGALPHIRRDEATAKIEALGGKVSGSVSKKTDFVLVGAEPGSKFIKAQELGITLLD
EDQFINLISESNGERDG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgttgcaataaaggagcgcattagcgctttgcgcgaacagctcgagtatcat
aattaccgttattatgtgcttgacgcgcctgaagtcagcgatgcggaatacgatcgttta
tttcgcgaattgcaggcgctggaacagcagtatcctgaattaattattcccgtttcccct
acccagcgcatcggcggtacagcgctcacagaatttacccaggttactcataccactccg
atgctgtcgctcaataatgcgtttagcgatgatgaagtcgtggcatttgaccggcgcgtg
cgcgaagcaagcgatttgccgacgatcgaatacgcagtggaacccaaattcgatggtctg
gcgattagcctggtgtacgagaacggtcagctggtgtcgggggcgacgcgcggcgacggt
tatgtcggcgaggatgtcaccgccaatctgcgcacgatacgtgccattccgttgagcctg
acgctggctaatccgcctgcgcgcatggaaattcgcggcgaagtcctgatgctgaagtct
gattttgctgcattgaacaggagccagcgcgaacagggtctgaaagaattcgctaatccc
cgcaatgccgcagcgggttcgctacggcaactggattcgcgtattaccgccacgcgcggc
ttgcatttttttgcttatggcgtcggccagtgtgaaggcggcgttttgccggcgacacat
ggcgaggtgatgaatcagctgatggtgtggcatatgccggtggcgcaggagcgtgctgtc
gtgcagggcgtggacggattgctggcctattatcggcaaatgggtgcggcgcgcgatagt
ctggctttcgatatcgatggcgtggtgtataaggttaatgatctggcattgcagcagcgt
atcggttatgtagcgcgtgcgccgcgtttcgccatcgcgcacaagtttccggctcaggaa
gcgactacccaattgctggatatcgatgtgcaagtcggacgtaccggggcgctcacgccg
gtagcgcggttggcaccggtagcggttggcggggttaccgtgacgaatgctaccttgcat
aatgaagatgaaatccggcgcaagggcgtgctgatcggcgattgggtcaatgtgcggcgg
gctggggatgtgattcccgaggtcgtgtcggtggtcacgtcacggcgcccgcaggatgca
cgcgaattcgtcatgccggtcgtgtgtccggtttgcgggtcgcatgtggtgcgcttgcct
gacgaagccgtggcgcgctgtactggcggattgttttgtcctgcgcagcgcaagcaggcg
ttatggcattttgccagccgccgggcgctggatatcgacggactgggcgaaaagctgatt
gagcagttggtagatgcggggctggtcaacaatccggcggatctgtatcggctgggtttg
ctcagtctggtcaatctcgagcgcatggctgaaaaatccgccagcaatctgcttgcggcg
attgagcacagcaagcatacgactttggcccggtttatttacgccttgggtatccgccat
gtcggcgagcagaccgcaaaagacctggcgcgttacttcggcaagctggaaaccatgatg
gcggcagatgaaacgcagttgcagcaagttccggaagtcggcgaggtggtggccaaatcg
atagtgcagttttttgccgagccgcataatctgacggtgatatcgctgctgcgtgcggca
ggtgtgtgctgggatgaaaccgtgcccgtcagcgtgaagcatggttcgattgcagggaaa
gtttttgtgattacaggtgcgctaccgcacatacggcgtgatgaagcgactgctaaaatt
gaagctttgggtggcaaggtgtctggaagtgtgtcgaaaaaaaccgattttgtactggtt
ggcgcggaacccggcagcaaattcatcaaggcgcaagaattggggattactctattggac
gaagaccaattcatcaatttaatcagtgaaagcaatggagagcgggatgggtaa
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integrated database retrieval system
