Sulfurimonas lithotrophica: FJR48_04575
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Entry
FJR48_04575 CDS
T06298
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sulg
Sulfurimonas lithotrophica
Pathway
sulg03030
DNA replication
sulg03410
Base excision repair
sulg03420
Nucleotide excision repair
sulg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJR48_04575 (ligA)
03410 Base excision repair
FJR48_04575 (ligA)
03420 Nucleotide excision repair
FJR48_04575 (ligA)
03430 Mismatch repair
FJR48_04575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulg03032
]
FJR48_04575 (ligA)
03400 DNA repair and recombination proteins [BR:
sulg03400
]
FJR48_04575 (ligA)
Enzymes [BR:
sulg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJR48_04575 (ligA)
DNA replication proteins [BR:
sulg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJR48_04575 (ligA)
DNA repair and recombination proteins [BR:
sulg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJR48_04575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJR48_04575 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJR48_04575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJR48_04575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
DUF4796_N
DUF249
Motif
Other DBs
NCBI-ProteinID:
QFR49038
UniProt:
A0A5P8P008
LinkDB
All DBs
Position
906103..908052
Genome browser
AA seq
649 aa
AA seq
DB search
MNNQEYKQAVQELNLYAYHYYVLDDPITTDEVYDELYHKVLDYEINNPDKKLNDSPTLRV
GDVVSEKFVKAKHLSRMWSLEDIFNADDLEAWLKKTYKLDENISFYCEPKYDGASLNLIY
ENGKLIQGITRGDGEEGEDITSNVKTIRSIPLSIEHQGRIEIRGEVVIFKDDFEKINEER
LKNNESVFANPRNAAAGSLRQLDSSITASRNLVFLPYGIGENTLEQKLLSDRMEYIYSLG
FKKPPQSRLCKGFEDIEGIYELMKNERDNYAMMLDGMVIKVNEISSQIDMGYTVKNPRWS
VAYKFPAVEKITTLKEIKLQVGRSGAVTPVAVVEPTDIDGVVVERATLHNFDEIDRKDIR
IGDKVIILRSGDVIPKIIKVLEHERSGNEQKFERPTNCPVCGSELLQEEVLVKCQNLSCE
ARVVNSIIYFASKPCLNIDGLGNKIVEALFNAGLVKNVIDLFSLTFEQLMELDSFKEKKS
QNLLDALEGAKGCEYWRFINSLGIEHIGEVASKTLSDAFGFSFIDASKEQIVECDGIGEE
MAESVLEFIRVNRETVLELQSILNPLEPVKKAEAEDNPFKGKTVVLTGTMSQPRPAIKEM
LESLGAKVSGSVSKKTDFLIYGEDAGSKYDKAMGLGVKCLTEDEMNGLL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaagagtataaacaagcagtccaagagttaaatttgtatgcctatcattac
tatgtattggatgacccgattacaaccgatgaggtttatgatgagctatatcataaagtt
ttagactatgagataaataatcccgataaaaaattaaatgattctcctactttaagagta
ggggatgtcgtgtctgaaaaatttgtaaaagcaaaacatctctctcgaatgtggtcactt
gaagatatctttaatgcagatgacttagaggcttggcttaaaaaaacttataaattagat
gaaaatatatctttttattgtgaaccgaagtatgacggggcttcacttaatttgatttac
gaaaacggtaagctgattcaaggtatcactcgcggtgacggagaagagggagaagacatt
acttcaaacgtaaaaactatccgttcaatccctttaagtatagagcatcaaggacgcata
gagattcgcggtgaagttgttatatttaaagatgattttgaaaaaataaacgaggagcgt
ttaaaaaataacgaatccgtatttgcaaaccctagaaatgcagctgcaggaagtttaaga
cagcttgattctagtattacggcatccagaaatttagtatttttaccttatgggattggg
gaaaatacactagagcaaaaacttttaagtgacagaatggaatatatctattctttagga
tttaaaaaaccgcctcaaagtagattatgcaaaggttttgaagatattgagggcatctat
gaacttatgaaaaacgagcgtgataattatgcgatgatgcttgatggcatggttataaaa
gtaaatgagatatcttcacaaatagatatgggttataccgtaaaaaatcctcgttggtcg
gttgcttacaaatttcctgcagtcgagaagataactacacttaaagagattaagcttcaa
gtaggtagaagcggtgcagtgacacccgttgcggtggttgaacccacggatatagacgga
gttgtagttgagcgtgcgacacttcataattttgatgagatagatagaaaagatattcgc
atcggagataaagttataatacttagaagcggggatgttatacctaaaatcataaaagtt
ttagaacatgaacgcagtggcaatgagcaaaagtttgagcgtccgacaaattgtccggtt
tgcggtagtgaacttcttcaagaagaggtacttgtaaaatgtcaaaacctctcatgtgaa
gcaagggtcgtaaactcgataatctactttgcatccaagccgtgtctaaatattgacgga
cttggaaataaaatagtagaagcactttttaatgccggacttgtgaaaaacgttattgat
ttgttctctttaacttttgagcagttaatggagttagatagttttaaagagaaaaaatct
cagaacttgctggatgcacttgaaggtgcaaaggggtgtgagtattggcgttttataaac
tctttgggaattgagcatatcggtgaagttgcttctaagacactctcagatgcatttggt
ttttcttttatagatgcaagtaaagaacaaatagttgagtgtgacggtattggcgaagag
atggcagagtccgtgttggaatttataagagtaaacagagagactgttttagagttgcag
agtattttaaatccgctagaaccggtaaaaaaagcagaagcggaagataacccttttaaa
ggaaaaactgtagttttaacaggcactatgagccagcctagacctgcaataaaagagatg
ttggagtctttaggtgctaaagttagcggcagtgtcagtaaaaaaacggactttttaatc
tacggtgaagatgcaggtagtaagtatgacaaagctatgggtcttggagttaaatgtctt
acagaagatgaaatgaatggattgttatga
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