Sulfurimonas xiamenensis: FJR47_06300
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Entry
FJR47_06300 CDS
T06240
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
suln
Sulfurimonas xiamenensis
Pathway
suln03030
DNA replication
suln03410
Base excision repair
suln03420
Nucleotide excision repair
suln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
suln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJR47_06300 (ligA)
03410 Base excision repair
FJR47_06300 (ligA)
03420 Nucleotide excision repair
FJR47_06300 (ligA)
03430 Mismatch repair
FJR47_06300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suln03032
]
FJR47_06300 (ligA)
03400 DNA repair and recombination proteins [BR:
suln03400
]
FJR47_06300 (ligA)
Enzymes [BR:
suln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJR47_06300 (ligA)
DNA replication proteins [BR:
suln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJR47_06300 (ligA)
DNA repair and recombination proteins [BR:
suln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJR47_06300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJR47_06300 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJR47_06300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJR47_06300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QFR43538
UniProt:
A0AAJ4DMT6
LinkDB
All DBs
Position
complement(1250512..1252470)
Genome browser
AA seq
652 aa
AA seq
DB search
MNLNDYKKAVEKLNLYAYHYYVLDDPITTDEVYDKLYHEVLEYEEHHKEDILPSSPTQRI
GDVVSEGFSKAHHLSRMWSLEDVFDSEGLQKWLIKTYKLDKNITFYCEPKYDGASLNLIY
EDGKLTQGITRGDGSVGELITQNVKTIRSIPLVINHKDRIEIRGEVVLYKDEFFRINQER
AAKGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGENTLEHKLLSQRMDYIYSLG
FKKPPLRATCKNFDEIEAVYEEMNKNRDSYAMMLDGMVIKVNEIAAQIDMGYTVKNPRFS
VAYKFPAVEKITTLKEIALQVGRTGVVTPVAIVEPTNIDGVVVERATLHNFDEIDRKDIR
INDKVIILRSGDVIPKIIKVLTHERDGSEIKYERPTTCPVCGSELLDEGVLLKCQNLKCE
ARVINSIIYFASKPCLNIDGLGSKIVEALFNSGLVKSVLDLFDLTLNKLLTLEGFKEKKA
QNLLNSLEAAKGCDYWRFVNSLGIEHIGEVASKTLSSRFGSSFIDATKEELVSLEGFGEE
MTESVLEFVRVNRDTILKLQEILRPLEPKQREEAKENPFKGKSVVLTGSMSESRDATKEM
LEALGAKVVSSVSKKTDFVIYGEDAGSKYDKAVNLGVAVLSEQEMRKKIEQT
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgattataaaaaagctgtagagaagctaaatctatacgcataccactat
tatgttcttgatgatccgattacgactgatgaggtgtacgataaactctatcatgaggtc
ttggaatacgaagagcatcacaaagaggatattttgccctcttcacctacacaaagaata
ggtgatgtagtctctgaaggattttcaaaagctcatcatcttagccgtatgtggagttta
gaggatgtttttgattctgagggtttgcaaaagtggcttataaaaacatacaagttagat
aaaaacataacattttactgcgaaccgaagtatgacggagcaagcttgaatcttatctat
gaagatgggaaacttactcaaggtataacccgcggagacggaagtgtaggcgaactgata
acgcaaaatgtgaaaacaatccgctcgattccattggttataaatcataaagatagaatt
gagattagaggtgaagttgtactctataaagatgaattttttagaataaatcaagagaga
gcagcaaaaggcgaagcggtttttgcaaaccccagaaatgccgcggcaggaagtctaaga
cagcttgactcaagcattaccgcttcaagaaatcttgtctttttgccttacggtgtcgga
gagaacactctggagcataaacttttaagtcaaagaatggattatatctactctcttggt
tttaaaaaaccgccgcttcgagctacatgtaaaaattttgatgagatagaagctgtatat
gaagagatgaacaaaaatcgcgacagctacgcgatgatgcttgatggcatggttataaaa
gtaaatgaaatagctgcgcagatagatatgggttacaccgttaaaaacccccgtttttca
gttgcttacaaatttcctgcagttgagaagataaccacgctaaaagagatagctcttcaa
gtgggacgaacgggtgtggttactccggttgctattgtagagccgacaaatattgatggc
gttgtagttgagcgtgcgacactgcacaattttgatgagattgatagaaaagatatccgc
ataaatgacaaggtcatcatccttagaagtggtgatgttataccaaaaatcataaaagtt
ttaactcatgagagagatggaagtgaaattaaatatgagcgaccgacaacttgcccggtt
tgtggcagtgagcttttggatgagggtgtgcttctaaagtgtcaaaatctaaaatgtgaa
gctagagttatcaactccatcatctattttgcctcaaaaccgtgtctaaatattgacggc
ttgggctctaaaatagttgaggcactttttaattcagggcttgttaaaagtgttcttgat
ttgtttgatttaaccttaaataaactcttaactttagagggtttcaaagagaaaaaggca
caaaatttgcttaattcgcttgaagccgcaaaagggtgtgattactggcggtttgtaaac
tctttggggattgagcatatcggagaggtggcgtctaaaactctaagtagcaggtttgga
agttcttttatagatgccacaaaagaggaactagtctcgttagagggttttggagaggag
atgacggagtcggttttggagtttgtcagagtaaacagagatactatattaaaactccaa
gagattttgcgtccgcttgaaccaaagcagagagaagaggcaaaagagaatccgtttaaa
ggtaaaagtgtagtgcttacgggaagcatgagcgagtcaagagacgctacaaaagagatg
ctggaagctttgggtgcaaaagtggtaagttcagtctccaaaaaaactgattttgttatc
tatggcgaagatgcaggaagcaaatatgataaagctgtgaacttgggcgttgctgttctt
agtgagcaagagatgaggaaaaaaattgagcagacttga
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