Candidatus Sulfuricurvum sp. RIFRC-1: B649_08030
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Entry
B649_08030 CDS
T02537
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sulr
Candidatus Sulfuricurvum sp. RIFRC-1
Pathway
sulr03030
DNA replication
sulr03410
Base excision repair
sulr03420
Nucleotide excision repair
sulr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B649_08030
03410 Base excision repair
B649_08030
03420 Nucleotide excision repair
B649_08030
03430 Mismatch repair
B649_08030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulr03032
]
B649_08030
03400 DNA repair and recombination proteins [BR:
sulr03400
]
B649_08030
Enzymes [BR:
sulr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B649_08030
DNA replication proteins [BR:
sulr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B649_08030
DNA repair and recombination proteins [BR:
sulr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B649_08030
NER (nucleotide excision repair)
GGR (global genome repair) factors
B649_08030
MMR (mismatch excision repair)
DNA ligase
B649_08030
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B649_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFV97918
LinkDB
All DBs
Position
complement(1618608..1620620)
Genome browser
AA seq
670 aa
AA seq
DB search
MTQTEYKTAVKQLQKYSYHYYVLDDPITTDEEYDILYHKVVAYEGEHPDQIIPDSPTQRV
GDVPQDKFDKAQHLSRMWSLEDLFNREELETWVNRIVKGYGDVRFYCEPKFDGASLNLIY
DNGVLTQAITRGDGVEGEDVTQNAKTIQSIPLTIPYTGRIEIRGEVVIFKEDFEKINLER
SRNGESLFANPRNAAAGSLRQLDTRITASRRLVFMPYGIGANNLEIKNLSERMEWVYALG
FRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDAIAVQDELGYTVKNPRWA
AAYKFPAIEKLTTLREVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNFDEIERKDIR
IGDKVIILRSGDVIPKIVKVIASERNGSEQIIHRPKHCPVCHSELLDEGALIKCQNLSCE
ARVVNSIIYFASKQCLNIDGLGDKIVEALHSAGMVRELSDLFGLTMDQLLSLEGFKEKKS
RNLIEAIAAVKGCDCWRFINALGIEHIGEVASKTLCGAFGTAFDRASREEILALEGFGGE
MVESILEFSRVNSEKIETLRTLLNPVAPIKVEAAENPFKGKSVVITGSMSVPRDSIKAIL
EGLGAKVASSVSKKTDYVVYGEDAGSKYDKAVELGVTLLTESEFRELSSLSDSTTTTQGV
SVKAKNSLFD
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaaccgaatacaaaactgccgtaaaacagctccaaaaatactcctatcactat
tacgtcctcgatgatccgatcacgaccgacgaggagtacgacatcctctaccacaaagtc
gtggcgtatgagggtgaacatcccgatcagattatccccgattctccgacacagcgggtc
ggagacgtaccgcaggacaagtttgacaaggcacagcatcttagccgtatgtggagcctc
gaagacctctttaaccgcgaggagttggagacgtgggtgaatcgtatcgtaaaaggatac
ggtgatgtccgcttttactgtgagccgaagtttgacggggcgagtttgaacctcatttat
gacaacggtgtactgactcaggcgatcacgcgcggggatggtgtcgagggggaagatgtg
acccaaaacgccaaaacgattcagagtatccccctcacaatcccctatacggggcggata
gagattcggggtgaagtggtgattttcaaagaggattttgagaagatcaatctggaacgt
tcccgtaacggcgagtctctttttgccaatccgcgaaatgcggcggcgggaagcctccgt
cagctcgatacccgcatcaccgcgtcacgccgtttggtctttatgccttacggtattgga
gccaataacttggagatcaaaaacctctccgagcggatggagtgggtctatgctctggga
tttcgtaatcctcatatgacccatttgtgtgagagtgcggatcagatcgagacgttttac
catgagatgcgggttgagcgggataatttcgcgatgttgctcgatgggatggtgatcaag
gttgatgctatcgcggtgcaagatgaactgggctatacggtcaaaaatccccgatgggcg
gcggcgtataaattccctgccatcgagaaactcacaactttgcgcgaggtaatcatgcag
gtggggcgcagcggtgttgtcacccctgtcgccatcgtcgagccggtggacatcgagggg
gtaacggtagagcgttcgacgcttcataatttcgatgagatcgagcgcaaagatattcgg
atcggggacaaagtcattattttacgaagcggtgatgtgatcccgaaaatcgtcaaggtg
atcgcgagtgagcgtaacggtagtgagcagatcatccaccgaccgaagcattgccccgtc
tgtcattcagaactactcgatgagggggcgttgatcaaatgccagaacctctcatgcgaa
gcgcgggtggtgaactcaatcatctattttgcctccaaacaatgtctcaatatcgacggg
ttaggggataaaatcgtcgaagcgctccacagtgcgggtatggtgcgtgaactcagtgat
ctcttcggtctcacgatggatcagctactttcattggaagggttcaaagagaaaaaaagc
cgtaatctcatcgaggcgattgcggcggtcaaagggtgcgattgctggcgttttatcaat
gcgttggggatcgagcatatcggtgaagttgcatcgaaaacattgtgcggtgcattcggg
acggcgtttgatcgtgcgagccgtgaagagattttagcgttggaaggtttcggcggtgag
atggtcgaatcgatcctcgaattttcccgtgttaatagtgagaagattgaaacattgcgc
acacttttaaatcccgtagcccctatcaaagtggaagcggcagagaacccgtttaaaggg
aaaagcgtcgtgattacgggatcgatgtcggtgccgcgcgatagtatcaaagccatatta
gagggattaggggcgaaagtcgcttcgtccgtgtcgaaaaagaccgattatgtggtgtac
ggagaagatgcggggagtaagtacgataaagcggtcgagttgggagtaacattgctcacc
gagagcgagtttcgagagttatcgtcgctttccgatagcactacgacgacgcaaggggtt
agtgtaaaggcgaaaaatagtctttttgattaa
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