Stigmatella aurantiaca: STAUR_6317
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Entry
STAUR_6317 CDS
T01425
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03030
DNA replication
sur03410
Base excision repair
sur03420
Nucleotide excision repair
sur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STAUR_6317 (ligA)
03410 Base excision repair
STAUR_6317 (ligA)
03420 Nucleotide excision repair
STAUR_6317 (ligA)
03430 Mismatch repair
STAUR_6317 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sur03032
]
STAUR_6317 (ligA)
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_6317 (ligA)
Enzymes [BR:
sur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STAUR_6317 (ligA)
DNA replication proteins [BR:
sur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STAUR_6317 (ligA)
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STAUR_6317 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STAUR_6317 (ligA)
MMR (mismatch excision repair)
DNA ligase
STAUR_6317 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STAUR_6317 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DNA_pol_lambd_f
BRCT_2
RNA_pol_A_CTD
RUBY_RBDX
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
ADO74074
UniProt:
E3FH44
LinkDB
All DBs
Position
7755415..7757436
Genome browser
AA seq
673 aa
AA seq
DB search
MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSP
TQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPADVTYVCEPKLDGL
AITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEVRGEVFI
RKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPTEGVPAF
DTHTAKLEYLQKLGLPVNHHERAQGLEGVRAAYQAALKGRHALKFEVDGMVVKVDSEDQR
RRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVKVGGVTVSRAT
LHNEDELRRKDVRQGDTVFVRRAGDVIPEIVSVVPNQRPADSKPYEFPQHCPVCGAQAVK
DEEGAIIRCTGASCPAQLVEKVRHFASRPAMDIDGVGDKLAAQLVASGRVKTFADLYALT
REQLLSLERMGEKSADNLLAAIERSKQTTQRRFLYALGIRHVGEATAKALAEAFPEAPLL
YTADMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPAPPQVNTGGPFAGKT
VVLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDE
QAFLKLLQGDARS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtggatttgaagaccgccgagacacgcgcccgcgacctgcgccgggagctggcccaccac
aaccaccgctattacgtcctcgactcgccggaggtctccgatgcggagtacgaccggctc
atgcgcgagctccaggggctggaggcgcaatttcccgcgctggccaccccggactccccc
acccagcgcgtggggggcgaggccgccgagaagttcgcgaaggtcgttcaccgggcgccc
atgctctcgctggccaacgtcttcaatgacgaggagttcaccgagttcgacgagcgcatc
cgcaaggtggtgggccccgcggacgtcacctatgtctgcgagcccaagcttgacgggctg
gccatcaccctgcgctacgagaatggccgctttctccagggggccacccggggagatggc
accaccggcgaggacgtgacgggcaacctgcgcaccgtgcgccccctgccgctggagctg
ctgcccgaggcggggatggcggtgccccccgtcctcgaggtccgcggcgaggtcttcatc
cgcaaggaggacttcaagaagctcaacgagaagcgcgaggaagagggcgaggcgctcttc
gccaacccgcgcaacgccgccgccggcagcctgaggcagctcgatccgaagatcaccgcc
tcgcgcccgctgtccgtctcgctctacgagatcgtccccaccgagggcgtgcccgccttc
gacacccacaccgcgaagctcgagtacctccagaagctggggctgccggtgaaccaccac
gagcgcgcccagggcctggagggcgtgcgcgccgcgtaccaggccgcgctgaagggccgc
cacgcgctgaagttcgaagtggatggcatggtggtgaaggtggacagcgaggaccagcgc
cgccggctcggccaggtgtccaagagcccccgctgggccgtggcctacaagttccctccc
gaggaggagtccacccgggtggaggccatcgaggtgcaggtgggccgcacgggcgcgctc
acccccgtggcccacctcaagcccgtcaaggtgggcggcgtcaccgtgtcgcgcgccacc
ctgcacaacgaggacgagctgcgccgcaaggacgtgcgccagggcgacaccgtcttcgtg
cgccgcgcgggcgacgtcatccccgagatcgtctccgtggtgccgaatcagcgcccggcg
gactcgaagccctatgaattcccccagcactgcccggtctgcggtgcccaggcggtgaag
gacgaggagggcgccatcatccgctgcaccggcgcctcgtgccccgcccagctcgtggag
aaggtgcgccacttcgcctcgcgccccgccatggacatcgatggggtgggcgacaagctg
gccgcccagctcgtcgcctccggccgggtgaagacgttcgcggacctctatgccctcacc
cgggagcaactgctgagcctggagcgcatgggcgagaagagcgccgacaacctgctggcc
gccatcgagcgctccaagcagaccacccagcgccgcttcctctatgccctgggcatccgc
cacgtcggcgaggccaccgccaaggccctggccgaggcgttccccgaggcgcccctgctc
tacaccgccgacatggaggccctcacccgcgtcaaggacgtgggccccaccatggcccag
gtgctccatgccttcttccaggagccgcagaaccgcgccgccatcgacgccctgctggcg
gccggggtcacgccggccccgccccaggtcaacaccggggggcccttcgcgggcaagacg
gtggtgctcaccggcgggatgaccggcatgtcgcgcgaccaggcgaaggaggaaatcgag
cggcgagggggtaaggtatcgggcagtgtctctcgcaagaccgatttcgtggtggccggc
gaggatgctgggagcaagctgaagaaggcccaggaactcggggtaagagtcctggacgag
caggcgttcctgaagctgcttcagggcgacgcccggagttga
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