Sporosarcina ureae: SporoP32a_06375
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Entry
SporoP32a_06375 CDS
T04877
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sure
Sporosarcina ureae
Pathway
sure03030
DNA replication
sure03410
Base excision repair
sure03420
Nucleotide excision repair
sure03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sure00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SporoP32a_06375 (ligA)
03410 Base excision repair
SporoP32a_06375 (ligA)
03420 Nucleotide excision repair
SporoP32a_06375 (ligA)
03430 Mismatch repair
SporoP32a_06375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sure03032
]
SporoP32a_06375 (ligA)
03400 DNA repair and recombination proteins [BR:
sure03400
]
SporoP32a_06375 (ligA)
Enzymes [BR:
sure01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SporoP32a_06375 (ligA)
DNA replication proteins [BR:
sure03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SporoP32a_06375 (ligA)
DNA repair and recombination proteins [BR:
sure03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SporoP32a_06375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SporoP32a_06375 (ligA)
MMR (mismatch excision repair)
DNA ligase
SporoP32a_06375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SporoP32a_06375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ARK21184
LinkDB
All DBs
Position
complement(1277626..1279653)
Genome browser
AA seq
675 aa
AA seq
DB search
MDDVLELEKRVAELNKLLHEYGRAYYDLDAPIVPDSEYDKKMQELLAIEEAHPDLIYPDS
PTQRVGGAPLEVFSKVVHRHPMLSLANAFNEEDLRDFDRRVKEATGSAVYVCELKIDGLA
VSLQYEEGRLVQGATRGDGAVGEDITANLKTIRSVPHTLKESLTIEVRGEAYMPKNSFVK
LNEDRDEAGEVPFANPRNAAAGSLRQLDSKVAESRNLATFIYAVGGDAEVYGLDSHSEAL
NKVDELGLTTNKERKRCATIEEVLEYVAYWTENRQNLDYEIDGIVIKVDNFESQEQLGYT
AKSPKWAIAYKFPAEEVHTKLVDIELSVGRTGVVTPTAILVPVLVAGTTVGRASLHNEDL
IREKDIRIGDHVVLRKAGDIIPEIVMALKDQRTGEEEPFHMPDNCPVCDSELVRIEGEVA
LRCVNPKCPAQMKEALIHFVSRRAMNIDGVGEKLIEQLYTANLVQDVSDLYTLTKEALLG
LERIGEKSATNILTAIEQSKENSLEKLLFGLGIRHVGEKVARILAEQYRTLDALEQATEE
ELLNIFEIGAIVADSVTTYFSTEEVQEVMNKLRSYGVNTVYKGVTREELPTTGPFAGKTI
VLTGKLTELTRGEAKEQIESLGGSVSGGVSKKTDLVIAGEDAGSKLTKAQELEIEIWDEQ
AMLDALGVDMNEKND
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgttctagaactagagaagcgggtagcggagctcaataaacttctgcatgaa
tacgggcgtgcttattatgatctggatgcccctatcgttcccgattcagaatatgataaa
aagatgcaggaattgctggcaattgaagaagcgcatccagacttgatctatcctgattca
ccgacacaacgagtgggtggtgctccacttgaagtgttcagtaaagtggttcatcgtcat
ccgatgctcagtttggcgaatgcgttcaatgaagaagacttgcgagattttgacagacgg
gtgaaggaagcgacagggagcgctgtctatgtatgtgaactaaagattgatggtcttgct
gtttcattgcaatatgaagagggacggcttgtacaaggagctactcgtggagatggtgca
gttggagaagatattacagccaatttgaagaccattcgttcagtaccacatacattgaaa
gagtccttgacgattgaagtccgtggtgaagcgtatatgccgaagaattcatttgttaag
ctaaatgaagaccgtgatgaagcaggcgaagtaccttttgctaacccgcgaaatgcagcc
gcgggttcattacgtcaactggattcaaaagtggctgagagtagaaatttagctacgttc
atttatgcagttggcggagatgctgaagtatatgggctggacagtcactcagaagcactc
aataaagtcgatgaactaggattgacgacgaacaaagaacgtaaacgttgcgcaacgatc
gaagaagtattggaatacgttgcctactggacagaaaatagacagaatcttgattatgaa
attgatgggattgtcataaaagtagacaactttgaatcgcaggaacagttagggtataca
gcaaagagtcctaaatgggccatagcgtataaattccccgctgaagaagtgcatactaaa
ctagtcgatatagagctaagtgtaggtcgaacaggggtagttacaccgacagccatcctc
gtgccagttttggtggcaggtacgacagttggccgtgcatccttgcacaatgaagacctg
attcgcgaaaaagatatccgaattggtgatcatgtagtgcttcgcaaagctggcgatatc
attcctgaaatcgtcatggcattgaaagatcaacgaacaggtgaagaagagccattccat
atgcccgacaactgtcctgtatgcgattcagaacttgtgaggattgaaggggaagttgca
cttcgttgtgtaaatcctaagtgtcctgcgcagatgaaagaagcattaatccatttcgtt
tcaagaagagcaatgaatatagatggagtcggtgaaaaactaatcgagcaattgtacaca
gcgaatcttgtgcaagatgtatctgatctgtatacgttaacgaaggaagctttactagga
ttagagcgaataggagagaaatctgctacaaatattttaacggctatagaacaatccaaa
gaaaattcgttagagaaattactgtttggtttgggcattcgtcacgtcggtgaaaaagtt
gccagaatcttagcggaacaatatcgtacactcgatgctttagaacaggctactgaagag
gaacttttgaatatctttgagattggtgcgatcgtagctgattctgtgacaacgtacttc
agtacggaagaagttcaagaagtcatgaataagttgcgttcctacggtgtaaatactgtt
tataaaggtgttacacgcgaagagttgccgactactggacctttcgctgggaaaacgatt
gtactaacaggaaagcttactgaattaacgcgcggagaagcaaaagaacagattgaatcg
cttggtggatccgtcagtggcggtgtcagtaagaaaacggatctagttattgcaggcgag
gatgcgggctccaagttgacgaaagcacaagaattagagattgaaatttgggatgaacaa
gctatgcttgatgcccttggagtggatatgaatgagaagaacgactaa
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integrated database retrieval system
