Serratia ureilytica: J0X03_06230
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Entry
J0X03_06230 CDS
T07185
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
suri
Serratia ureilytica
Pathway
suri03030
DNA replication
suri03410
Base excision repair
suri03420
Nucleotide excision repair
suri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J0X03_06230 (ligA)
03410 Base excision repair
J0X03_06230 (ligA)
03420 Nucleotide excision repair
J0X03_06230 (ligA)
03430 Mismatch repair
J0X03_06230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suri03032
]
J0X03_06230 (ligA)
03400 DNA repair and recombination proteins [BR:
suri03400
]
J0X03_06230 (ligA)
Enzymes [BR:
suri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J0X03_06230 (ligA)
DNA replication proteins [BR:
suri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J0X03_06230 (ligA)
DNA repair and recombination proteins [BR:
suri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J0X03_06230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J0X03_06230 (ligA)
MMR (mismatch excision repair)
DNA ligase
J0X03_06230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J0X03_06230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QSR08578
LinkDB
All DBs
Position
1349980..1352001
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVERDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFS
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVMVVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagccacattgcgccatcatgaatac
cagtatcatgtgctggatgcgcccgaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctcgagagcgcgcatccggagctgatcaccgccgattcgccgacccag
cgcgtgggcgcggcgccgctggcggcgtttgatcaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgttcgacgaagagagcttcctggcgttttacaagcgcgtgcaggac
aggctcaagagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtacgaagacggcgagctggtgcgtgcggcgacgcgcggcgacggcacc
accggcgagaacatcacctccaacgtgcgcaccattcgcgccatcccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgcggcgaagtgttcatgccgcaggccggg
tttgaacagatgaacgaagaggcgcggcgcaaagacggtaaggtgttcgccaatccgcgc
aacgccgccgccggttcgctgcgccagctcgatccgcgcattaccgccaaacgcccgctg
accttcttctgctatggcgtcgggctgctggaaggcggcgagctgccgcgcagccacttt
gaacgcctgatgcagttcaaggcctggggcctgccggtcagcgatcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttctatcgccaggtcgagcgggaccgcgcacagctc
ggtttcgatattgacggcgtggtgatcaagattgacgacatcgatctgcaggaaacgctg
ggcttcgtggcgcgtgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcgcgccttgaaccggtgctggtggccggggtgaccgtcagtaacgccaccttgcacaac
gccgatgaaattgagcgtctggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtgctggaagaccgcaggccgcaggatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggctccgacgttgagcgcgtggaaggc
gaagccgttgcgcgctgcaccggcgggctgatctgcggggcgcagcgcaaagaggcgttg
aagcatttcgtttctcgccgcgcgctggacgtcgaaggcatgggcgacaagatcatcgag
caactggtggacaaggagtacgtgaagaacccggccgatctgttccgcctgtccgccggc
attctgaccggtctggatcgcatggggccgaaatcggcacagaacctggttaacgcgctg
gagaaatccaagcagaccaccttcgcccgtttcctgtatgcgctcggcattcgcgaggtt
ggtgaagcgaccgccgccaacctggcggcgcatttcggatcgctcgagaagttgttttcc
gccgatatcgaagcgctgaaagaggtgccggacgttggcgaagtggtggccaaacacact
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagctggtgggcgccgag
attggcatccattggccggcgccggtgatggtggtggcggaggagatagacagcccgttc
gccggtaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgttgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatctg
gtgatcgccggcgaagcggccggttccaagctggcgaaggcgcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcttgctgggtgactga
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