Sporosarcina ureilytica: BI350_03670
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Entry
BI350_03670 CDS
T08603
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
surl
Sporosarcina ureilytica
Pathway
surl03030
DNA replication
surl03410
Base excision repair
surl03420
Nucleotide excision repair
surl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
surl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BI350_03670 (ligA)
03410 Base excision repair
BI350_03670 (ligA)
03420 Nucleotide excision repair
BI350_03670 (ligA)
03430 Mismatch repair
BI350_03670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
surl03032
]
BI350_03670 (ligA)
03400 DNA repair and recombination proteins [BR:
surl03400
]
BI350_03670 (ligA)
Enzymes [BR:
surl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BI350_03670 (ligA)
DNA replication proteins [BR:
surl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BI350_03670 (ligA)
DNA repair and recombination proteins [BR:
surl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BI350_03670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BI350_03670 (ligA)
MMR (mismatch excision repair)
DNA ligase
BI350_03670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BI350_03670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Cas_Csn2
Motif
Other DBs
NCBI-ProteinID:
AOV06774
UniProt:
A0A1D8JDK5
LinkDB
All DBs
Position
723177..725186
Genome browser
AA seq
669 aa
AA seq
DB search
MDRIELEKRVEELNHLLHKYAHAYYTLDKPLVSDAAYDELFQELLAIETEHQDLRFPDSP
TARVGGEILSGFGKVTHENPMLSLANAFNEQDLRDFDRRVQEATSPNVSYICELKIDGLA
ISLRYVDGRFVQGATRGDGTVGEDITENLKTIRTVPLRLQEPVSLEVRGEAYMPKGSFVK
LNEARDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLAIFVYGIGGDGSEYGVDSHSDAL
DYTHTLGFQTNKERRRCASIDEVITYIEEWTEKRTSLDYEIDGIVVKVDSFEDQEQLGFT
ARNPRWAIAYKFPAEEVMTKLTDVELSVGRTGVVTPTAILEPVLVDGTTVGRASLHNEDL
IKEKDIRIGDTVIIRKAGDIIPEVVAPIIESRTGDEVPFAMPENCPECDSELVRLDEEVA
LRCVNPQCPAQMKEAIIHFVSRNAMNIEGIGERIVEQLYRAELVHDVADLYTLTKDQLIE
LERMGEKSVSNLLTAIEQSKENSLEKLLFGLGIRHVGVNAATILAEEFGTLEALMQADEE
KLVTIHEIGDKVAESVTTYFNNEDVLSVIQKLESAGLNLRYKGLTQEDVPSEGPFVGKTI
VLTGKLYEMTRGEAKKQIEALGGKVTGSVSKNTDIVVAGEAAGSKLVRAQELEITVWDEA
QLIEALGEI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatagaattgaacttgaaaagcgagtggaagagttaaatcatctcctccataagtac
gctcatgcttattatacgctcgataaaccactcgtttccgatgcagcttatgatgagttg
tttcaagaactactggcaatcgaaacagagcatcaagatttacggtttccagattcacca
acagcacgcgttggtggcgagatactttcaggtttcggtaaagtcacgcacgaaaatccg
atgctaagtttagcgaatgcctttaatgagcaagacttacgtgatttcgacagacgcgtc
caagaagcaacatcgccaaacgtttcctatatttgcgaattaaaaatcgatggcttagcc
atttcgcttagatatgtagatgggcgatttgtacaaggcgcaacacgcggggatgggacg
gtcggcgaagatattacggaaaacttgaaaacaattcgtaccgttccgctgcgccttcaa
gaacccgtttcccttgaagtacgcggggaagcttatatgcctaaagggtctttcgtcaaa
ctaaacgaagcacgtgacgaagcaggtgaagaaccatttgccaatccacgaaatgcggcg
gcaggatcacttcgtcaattagatccgaagattgcggcgagtagaaacttagccattttt
gtttacggaataggcggagatggtagcgaatatggcgtcgatagccattctgatgcacta
gattacacacatacattgggctttcaaacgaataaagaaagacgtcgttgtgccagtatc
gatgaagtcatcacctatatcgaagaatggacggaaaaaaggacatctttagattatgaa
attgacggcatcgttgttaaagtagattcatttgaagaccaagaacaactcggttttacg
gcgcgtaatccgagatgggcaatcgcttataagttcccggctgaagaagtgatgacaaag
ttaacagatgtcgaattaagtgtggggagaacaggtgtcgtcacaccgaccgcaattctt
gaaccagtcctcgtagacgggacaacagttggacgagcttcattgcataatgaagatttg
attaaagaaaaagatattcggattggtgatacggtcatcatcagaaaagctggagacatt
attccagaagtcgttgcaccaattattgaaagtcgaactggggatgaagtgccatttgcg
atgcctgaaaattgtccggaatgcgattcagaacttgtacggttggatgaagaagtcgct
ttacgttgtgtaaaccctcaatgtccggcacaaatgaaagaagcaattatccactttgtt
tctcgaaatgcgatgaatattgaagggattggcgagcgcattgttgagcaattgtaccgc
gcagaacttgttcatgatgttgcggatttatatacattaacgaaagaccaattaattgaa
cttgagcgtatgggtgaaaaatctgtctccaatttattaacggccattgaacaatcgaaa
gaaaattcattagaaaaattattgtttggtctaggcattcgtcatgttggggtaaatgct
gcaacgattttagcagaagagtttggtacactcgaggcgctaatgcaagccgatgaagaa
aaacttgttacaattcatgaaatcggcgacaaagtcgcggaatcagtgacgacttatttt
aataacgaagatgtactttcggtcatacaaaaactagaaagcgcaggcttaaacttaagg
tataaagggttgacgcaagaagatgtcccaagcgaagggccatttgttggcaaaacaatc
gttttaacaggtaaactctatgaaatgacacgcggagaagcgaaaaagcaaattgaagca
cttggcgggaaagtaacaggaagtgttagtaaaaatacagacattgttgtcgctggggaa
gcggcggggtctaagcttgtccgtgcacaagaactagaaattaccgtttgggatgaggcg
caactcatagaagcgttaggggaaatttaa
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