Streptococcus vestibularis: NCTC12167_00499
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Entry
NCTC12167_00499 CDS
T07051
Symbol
sdrD
Name
(GenBank) surface antigen
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
svb
Streptococcus vestibularis
Pathway
svb00550
Peptidoglycan biosynthesis
svb01100
Metabolic pathways
svb01502
Vancomycin resistance
svb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NCTC12167_00499 (sdrD)
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC12167_00499 (sdrD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
NCTC12167_00499 (sdrD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
svb01002
]
NCTC12167_00499 (sdrD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
svb01011
]
NCTC12167_00499 (sdrD)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
svb01504
]
NCTC12167_00499 (sdrD)
Enzymes [BR:
svb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
NCTC12167_00499 (sdrD)
Peptidases and inhibitors [BR:
svb01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
NCTC12167_00499 (sdrD)
Peptidoglycan biosynthesis and degradation proteins [BR:
svb01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
NCTC12167_00499 (sdrD)
Antimicrobial resistance genes [BR:
svb01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
NCTC12167_00499 (sdrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_5
GBS_Bsp-like
YSIRK_signal
Ribophorin_II_2nd
Motif
Other DBs
NCBI-ProteinID:
VED87081
LinkDB
All DBs
Position
1:459789..462371
Genome browser
AA seq
860 aa
AA seq
DB search
MRKAYVFKERQCYSIRKYSFGAASVLIGASLMLGGHALAQEQANSVNSNKDNEVIVNNSE
ALQIDQATSEAVIDVLNQPASRSEAPRPKLVSSEVASSEVSSVVVSEAASLEVPAEVAQS
ASAVASVASSEVASPRSEVSLVASSEAASETDRSATSEVAEARPTDREAVDTSLRTVLTN
ASQPGVDGPVTADGSLDIPSNGTFYFRRTTEIRTAPIMDIKPTFVFSAGDHVIYDKVLKR
DSHQWISYIGYDSERYYADIATLKAESTSSTTEVTRDETIPERGTYYFTKPADVKNQPSL
TAKTEFNFDSGMSVNYDRSLLADNHRWISYTSYSGTRRYVDLGAVAEAVAKPRGDISIES
HNNGDFSVVISNVSDQNGVLGVSVPIWSEKNGQDDIIWYNATRLSNGNYKVNVSLSDHKN
ERGLYNVHLYYVETNGKLVGVGGTTYTVPAKVEETHTTTSHSLPDSGTYAFKERSSIKAE
PRVASPELAYYDAGMSVNYDKIVSGDGYQWLSYLSYNGNRRYVAVAKLAQRESKPSGTIT
IENLSNLGFDVHITNVSSGDKAIQGVSVPVWTAKNGQDDLVWYQADRQSDGSYKVRINLT
DHKAEAGEYIVHLYYVQDGKMVGIGGTSTTVPVQSATRHNLPASGSYTFTARTGIKTQPL
VANPDVSYYDAGMSVNYDKVVNNDGYTWLSYLSYSGHRFYVAIAPTSVTKPVEQPVQPNT
SSSGTYTFKERSSIKAEPSMASPELAYYDAGMSVNYDKLVTADGHTWLSYVSYGGNRRYI
AIDGKVTAVAQPASPSLAATGTYTFTKPSSIKAQPSVASPELAYYDKGMSVRYDKVLTAD
GHTWLSYVTYSGARRYVDIS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggcatatgtttttaaggaacgtcaatgttactcaatacgtaaatattctttt
ggagctgcatcagtcttgattggtgctagcttgatgcttggtggacatgctttggctcag
gaacaagccaatagcgtaaattccaacaaggataatgaagttattgtaaataattctgaa
gcacttcaaattgaccaggcaacttcagaagctgttatcgatgtcctcaatcaaccagct
tcaagatctgaagcgccaagacctaagcttgttagcagtgaagttgcttcctctgaagtt
agtagtgtagtggtcagcgaggctgcttctttggaagtaccagcagaggttgctcaatct
gcatctgctgttgcttctgttgcgagctcagaggtggctagtccacgttctgaagtgtca
ttagtagctagctctgaagcagcaagtgagactgaccgttcagcgacttcagaagttgct
gaagctagacctactgaccgtgaagctgtcgatactagtcttcggactgtcttaactaat
gctagtcagcctggtgtagatggtccagtgactgctgatggttctcttgatatcccatca
aacggtactttctatttccgtcgcacaactgaaattcgtacagcgcctatcatggatatc
aaacctacttttgtctttagtgcaggcgaccatgttatctatgacaaggtcttgaagagg
gatagccaccaatggatttcttacattggttacgactctgaacgctactacgctgatatc
gcaactttgaaggctgaaagcactagtagcaccactgaagtgactagagatgaaaccatc
cctgaacgtggtacttattatttcactaaacctgcagatgtgaagaaccaacctagtttg
actgccaagactgagttcaattttgattctggtatgtcagtcaactacgatagatctttg
cttgctgacaaccaccgttggatttcttatacttcgtacagtggtactcgtcgttatgtc
gacctaggtgctgttgcagaggctgtagctaaaccaagaggcgacatttctattgaaagt
cataacaatggtgactttagcgtggttatcagtaatgtatcagatcaaaacggtgtcctc
ggagtgtctgttccaatctggtctgaaaagaatggtcaagatgacattatctggtataat
gcgactcgtcttagcaatggtaactacaaggttaatgtcagtctaagtgaccacaagaat
gaacgtggcctctacaatgttcatctttactatgttgaaactaatggtaaattagttggt
gtgggcggcacaacatacacagttcctgccaaggttgaagaaactcatacaactactagt
catagccttcctgactcaggaacttatgctttcaaagaacgctctagcattaaggcggaa
cctcgtgtagcaagcccagagttggcctactacgatgctggtatgtcagtcaactacgac
aagattgtcagtggtgatggttatcaatggctttcttacctcagctacaatggtaaccgc
cgttatgtagccgtggctaaacttgctcagcgagaaagcaaaccaagcggtactatcact
attgaaaatctctctaatcttggtttcgacgttcatattactaatgtttctagtggggac
aaagctattcaaggtgtaagtgttccggtttggacagctaagaacggccaagatgatctt
gtatggtaccaagctgacagacaaagtgatggtagctacaaggttcgcatcaatcttact
gaccataaggctgaagcaggcgaatacattgtccatctctactatgttcaagatggtaag
atggtaggcattggaggcactagcacaactgttccagtacaaagtgcaacccgccataac
cttccagcttcaggttcatatacctttaccgctcgaactggcattaagactcaacctttg
gtagctaacccagatgttagctactacgatgctggtatgtcagtcaactatgacaaggtt
gtcaataatgacggctatacatggctttcttatctcagctattcaggacatcgtttctat
gtggctatcgcaccaacgagtgtgactaaacccgtagaacaaccagtccaaccaaacaca
tcttcatctggtacctatacttttaaagaacgttctagtattaaagcagaaccaagtatg
gcaagtccagagttggcctactatgatgctggtatgtctgttaactatgacaaattggtg
actgcagatggtcatacatggctctcttatgtcagctatgggggcaatcgccgttacatt
gctattgatggtaaggtaacagcagttgctcaaccagcaagcccaagcctagcggcaact
ggcacctatacctttacaaaacctagctctattaaggctcaaccaagtgttgctagccca
gagttagcctactatgataaaggcatgtccgttcgctatgacaaggtcctaacagctgat
ggtcacacctggttgtcttatgtaacttatagtggtgcgagacgctatgtggacatttct
taa
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