Streptococcus vestibularis: NCTC12167_01496
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Entry
NCTC12167_01496 CDS
T07051
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svb
Streptococcus vestibularis
Pathway
svb03030
DNA replication
svb03410
Base excision repair
svb03420
Nucleotide excision repair
svb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12167_01496 (ligA)
03410 Base excision repair
NCTC12167_01496 (ligA)
03420 Nucleotide excision repair
NCTC12167_01496 (ligA)
03430 Mismatch repair
NCTC12167_01496 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svb03032
]
NCTC12167_01496 (ligA)
03400 DNA repair and recombination proteins [BR:
svb03400
]
NCTC12167_01496 (ligA)
Enzymes [BR:
svb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12167_01496 (ligA)
DNA replication proteins [BR:
svb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12167_01496 (ligA)
DNA repair and recombination proteins [BR:
svb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12167_01496 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12167_01496 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC12167_01496 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12167_01496 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
E1-E2_ATPase
HNOB
UPF0758_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
VED89080
LinkDB
All DBs
Position
1:complement(1516940..1518886)
Genome browser
AA seq
648 aa
AA seq
DB search
MKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQADSPTHRVGGLVL
DGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNADYMAELKIDGLSISLTYVDGVL
QVGATRGDGSVGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINIQRQENGE
AEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLTQNDVLNEVAELGFSVNPR
RIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFP
AEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVI
VYKAGDIIPAVLRVVESKRTTQEPMEVPTQCPSCGSGLLHFEDEVALRCINPSCPAQIKE
GLIHFASRDAMNIAGMGPSVVEKLFKAELVKDVADIYGLNSQDFLQLEGFKEKSAEKLYS
AIQVSKENSAEKLLYGFGIRHVGAKVSKQLLEAFGSIQELASADVEAIAAVDGLGDVIAK
SIQRYFAKEEAQVLMKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAK
LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctggtttctaaacttaaccagtatgcaaaagagtattatacggaagataat
ccatcggtgtcagacgcagactacgataagctctatcgtgagcttgtagatttggaggtt
gaacatccagaacttgttcaagcagatagtccaacacatcgtgtgggagggctggtcctt
gatggttttgaaaaatatcaacatgagtatccgctttatagtttgcaggatgctttttca
cgagaagagctggatgcctttgataagagggttaaggacgaatttcctaatgctgattat
atggctgaactcaaaattgatggtctctctatctcgctgacctatgtggatggtgttctc
caggtaggtgcgacacgtggtgatggttctgtcggtgaaaatatcactgaaaatgtcaag
cgtatctcagatatccctcttaagctggatcaaccgcttaatattacagtgcgtggggag
tgttatctgccacgagctgagtttgaacgcatcaatatccaacgtcaggagaatggtgaa
gccgaatttgccaatccacgtaatgctgcagcagggactcttcgtcagttggataccaaa
gtggttgcggagcgtcgtttagcgactttcctttatcaggaagctagtccaacggagcgt
ctcacacaaaatgatgtcttaaatgaagtggcagaactaggtttctcagttaatccacga
cgcattgtcacatcgtcgatggatgagatttgggactttattcaagctgtcggtcaggat
cgtgatgacttggcttacgatattgatggcgttgttataaaggtcaatagtttagccatg
caagaggaattaggttttacagtcaaggcaccacgttgggccattgcctataaattccct
gctgaggaaaaggaagcagagcttctttcagtagactggcaggtaggtcgtacaggtgta
gtaacgccgactgctaatttgactccggtgcaattagcagggacaacggttagtcgagct
acccttcataatgtggattatattgctgaaaaagacattcgtatcggtgataccgttatt
gtctacaaagctggtgatattatccctgctgttcttcgtgtggtagaaagtaagcgtacg
acacaggagccgatggaagtaccgacacaatgtccatcttgtggcagtggtcttttacat
tttgaagatgaagttgccctacgttgtatcaatccttcttgccctgctcagatcaaggaa
ggtctgattcattttgcttctcgtgatgccatgaacatcgcaggtatgggaccttcagta
gttgaaaaactctttaaagctgaattggttaaagatgtagctgatatctatggcttgaac
agtcaagatttcctccaattagaaggtttcaaggaaaaatcagctgagaaactttattcg
gccattcaagtctcaaaagaaaattctgcagagaaattgctctatggctttgggattcgt
catgttggtgccaaggttagtaagcaattgttagaagcttttggaagtatacaagagtta
gccagtgcggatgtcgaggctattgctgctgtagatggtttaggagatgttattgccaag
tccatccagcgctattttgctaaggaagaggctcaagttcttatgaaagaactggaatcc
tatggcgttaatttgtcctatcttggacaaaaggtggcagatgatgctatcttatctggt
aagacagttgttttgacagggaaattggagcatcttaaacgtagtgaagcaaaggcaaaa
ctagaagctctgggtgctaaagtgacaggttctgtctctaagaaaacagatttagtggtt
gctggtagtgatgccggaagtaagttggaaaaagcacaaagcctaggaattgaagtaaaa
gatgaggcttggttgctggatttatag
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