Stella vacuolata: STVA_42600
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Entry
STVA_42600 CDS
T06335
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svc
Stella vacuolata
Pathway
svc03030
DNA replication
svc03410
Base excision repair
svc03420
Nucleotide excision repair
svc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STVA_42600 (ligA)
03410 Base excision repair
STVA_42600 (ligA)
03420 Nucleotide excision repair
STVA_42600 (ligA)
03430 Mismatch repair
STVA_42600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svc03032
]
STVA_42600 (ligA)
03400 DNA repair and recombination proteins [BR:
svc03400
]
STVA_42600 (ligA)
Enzymes [BR:
svc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STVA_42600 (ligA)
DNA replication proteins [BR:
svc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STVA_42600 (ligA)
DNA repair and recombination proteins [BR:
svc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STVA_42600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STVA_42600 (ligA)
MMR (mismatch excision repair)
DNA ligase
STVA_42600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STVA_42600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
Peripla_BP_4
DUF3701
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBK44240
LinkDB
All DBs
Position
4513636..4515747
Genome browser
AA seq
703 aa
AA seq
DB search
MKTDPTSPAPIEALTIEEAAAELERLAAEIAHHDRRYHQEDAPEISDAAYDQLRRRNDAI
EARFPELVREDSPSRRVGAAPGQGFRKVRHSRPMLSLDNAFSDADVIAFFTSVRQFLRKD
EPFRSQPDAPIAVVAEPKIDGLSATLRYEGGRFVLGATRGDGEVGEDVTANLRTLRDVPQ
QLADPAPAVLEIRGEVYMTRADFFALNQRRMAAEEPIFANPRNGAAGSLRQLDPTITAER
PLRFFAYAWGETSEEIADTHSGALERMRGWGFQVNPETRRCASIEEALELHRSLAGRRAD
LGYDIDGVVYKVDSLAFQARLGFVTRAPRWAIAHKFPAEQAQTRLNAITIQVGRTGALTP
VAELEPVTVGGVVVSRATLHNEDEIQRKDVRVGDQVVLQRAGDVIPQIVSVVLDRRPPDA
EPFRFPDICPACGSHAVREPGEVVRRCTGGLICPAQAVERLRHFVSRNAFDIDGLGEKHI
AAFRADGLIHGPADIFRLAEDPAPLVGREGWKETSIANLQRAVRARRQVPLDRFIYALGI
RQVGEATARLLARNYETLDAFRSAMVAAADEAGEAFHDLDSISGIGASVARDIVQFFAEP
HNQQVVDDLLAAGVTVTAVAAPRQVASPIAGKTVVITGELERMTRREAKARAEALGAKVA
ESVSKKTDLVVVGASPGSKATKARELGVRTLDEAEWLALIGDA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgaccccacctcccccgcccccatcgaagcgctgaccatcgaggaggccgcg
gccgaactcgaacggctggcggccgagatcgcccaccacgaccgccgctaccaccaggag
gacgcgccggagatcagcgacgccgcctacgaccagctacgccggcgcaacgacgcgatc
gaggcgcgcttccccgagctggtgcgcgaggacagccccagccgccgggtgggtgcggcc
ccgggccagggcttccgcaaggtgcgccacagccggccgatgctgtcgctcgacaacgcc
ttctccgatgccgacgtcatcgccttcttcacctcggtgcggcagttcctgcgcaaggac
gagccgttccgctcgcagccggacgcgccgatcgcggtggtggccgagcccaagatcgac
gggctgtcggcgaccctgcgctacgagggcggccgcttcgtcctgggtgccacccgcggc
gacggcgaagtcggcgaggacgtgacggccaacctccggaccctgcgcgacgtgccccag
cagctggccgaccccgcccccgcggtgctggagatccggggcgaggtctacatgacccgg
gcggacttcttcgccctcaaccagcgtcgcatggccgccgaggaaccgatcttcgccaac
ccgcgcaacggcgccgccgggtcgctgcgccagctcgaccccaccatcaccgcggagcgc
ccgctgcgcttcttcgcctatgcctggggcgagaccagcgaggagatcgccgacacccat
tcgggcgcgctggagcggatgcgcggctggggcttccaggtcaacccggagacccggcgc
tgcgcctcgatcgaggaggcgctggagctgcaccgctcgctggccgggcggcgggccgac
ctcggctacgacatcgacggcgtcgtctacaaggtggacagcctggccttccaggcccgc
ctcggcttcgtcacccgggcgccgcgctgggcgatcgcccacaagttcccggccgagcag
gcccagacgcggctcaacgccatcaccatccaggtcggccgcaccggcgcgctgacgccg
gtggccgagctggagccggtgacggtcggcggcgtcgtggtgtcccgcgccaccctgcac
aacgaggacgagatccagcgcaaggacgtgcgggtcggcgaccaggtggtgctgcagcgg
gccggcgacgtcatcccgcagatcgtctccgtcgtcctcgaccgccggccgcccgacgcc
gagccgttccgcttccccgacatctgccccgcctgcggcagccacgcggtgcgcgagccg
ggcgaggtggtgcgccgctgcaccggcgggctgatctgcccggcccaggcggtggagcgg
ctgcgccatttcgtgtcccgcaacgctttcgacatcgacgggctgggcgagaagcacatc
gccgccttccgcgccgacgggctgatccacgggccggccgacatcttccgcctggccgag
gacccggcccccctggtcggccgcgagggctggaaggagacctcgatcgccaacctgcag
cgcgcggtgcgcgcgcgccgccaggtgccgctcgaccgcttcatctatgcgctcggcatc
cgccaggtgggcgaggcgacggcccgcctgctggcccgcaactacgagacgctggacgcc
ttccgcagcgccatggtcgccgccgccgacgaggcgggcgaggccttccacgacctggat
tcgatcagcggcatcggcgccagcgtcgcccgcgacatcgtccagttcttcgccgagccg
cacaaccagcaggtggtcgacgacctgctcgcggccggggtgaccgtcaccgcggtggcg
gccccccgccaggtcgcctcgcccatcgccggcaagacggtggtgatcaccggcgaactg
gagcggatgacgcggcgcgaggccaaggcgcgggccgaggcgctgggcgccaaggtcgcg
gagtcggtgtcgaagaagaccgacctggtggtggtcggcgccagtcccggctccaaggcg
accaaggcccgggaactgggcgtgcgcacgctcgacgaggccgagtggctggccttgatc
ggcgacgcgtga
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