Solanum verrucosum: 125824474
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Entry
125824474 CDS
T11474
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125824474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125824474
Spliceosome [BR:
sver03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125824474
Complex C
U5 SnRNP specific factors
125824474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
SOI
Roc
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
125824474
NCBI-ProteinID:
XP_049359814
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREEEDDELPDRSDDERVASDGEQPGASNGWLATQDD
IDMDNQVILAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPALVRNVALVGHIHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMSAALRLADGAVLIV
DAVEGVMVNTERAIRHAILERIPIVLVINKVDRLITELKLPPKDAYFKLKHIVETVNNQI
TAASSTAGNAQVIDPALGNVCFASATAGWSFTLQSFAKLYVKLHGIAFDANKFALRLWGD
FYFDPDTRSFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
NCDSAGPLMVNVTKLYPKPDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNLEFDEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
IDWPRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgaatttgggaactatattggtcccgaaatagagtctgat
caggaaagtgatagggaagaggaagacgatgagcttcccgataggagtgatgatgagaga
gttgcatctgatggtgagcagcctggtgcgtcaaatggatggcttgccactcaagatgat
attgatatggataaccaagttattcttgctgaagacaagaaatactatccaacagctgaa
gaggtttatggtgaagaagttgagacgttggtcatggatgaagatgaacagccacttgaa
atgccaataattaaaccggtgaagaatctcaagtttgaactaggggtgaaggattcgtcc
acttatgtttcgactcagtttctcttaggtctgatgtcgaacccagcattggttagaaat
gttgctctagttggacacatacatcacgggaagactttgtttatggatatgctggtggaa
caaacacaccatatatctacgtttgatcagaatagtgagaagcatatgaggtatacagac
acaagaatagacgagcaagagaggaggatatcaattaagtctgttcctatgtcactagtc
ttggaagacagcaattcaaagtcttacctatgtaacattatggatgctcccggccatgtc
aacttctccgatgaaatgtccgctgctttaagacttgcagatggggcagttttgattgtt
gatgcagttgaaggagtgatggtaaatacagaaagggccattaggcatgcgattctagaa
cgtattccgattgttcttgtgatcaacaaggttgacagattgataactgagcttaaattg
ccaccgaaggacgcctacttcaaattaaagcacatagttgaaactgtcaacaatcaaatt
acagctgcctcgtccacagctggaaatgcacaagtaattgatcctgcattagggaatgtc
tgctttgcaagtgcaacagcaggatggtcattcactctgcagtcatttgccaaactgtat
gttaagcttcacggaattgcatttgatgccaacaagtttgctttgcggctttggggggac
ttctactttgatcctgatacaagaagtttcaagaagaaaccgcctgcaagtggggttgaa
agatcttttgttcagtttgttcttgaacctctttacaaaatctatagccaagtgatcgga
gagcacaagaagagtgttgaagcaaccctagcagaacttggggtgacactaagcaatgca
gcttaccgtctaaatgtaaggcctctgctgaggctggcttgcagtgctgtatttggaact
gccactgggtttactgacatgttggttcatcacatcccttctgctaaagctgctgcagct
aggaaagtggaacacatatacacgggtccaaaggattcagcaatttacaaagcaatggag
aattgtgattccgctggcccgttgatggttaatgtgactaagctatatccgaaaccagat
tgtagcgtttttgatgcttttggtagggtttacagcggggaaataatgacagggcagaca
gtacgtgttctgggtgagggctattcacctgatgatgaagaggatatgactgtaaaagaa
gttacaaagctgtgggtatatcaagctagatacaggatacccataagtaaggctcctcca
ggtgcatgggttctgattgaaggagtggatgcctcaatcatgaaaactgctactctttgt
aatttggaatttgatgaggatgtatacatatttcgccccctccagtttaatactcttccc
gtggtgaaaacagcaactgaacctttgaatcctagcgaattgcccaaaatggtggagggg
cttagaaaaatcagcaagagttatcctcttgcaatcacaaaggttgaagagtccggtgaa
cacacaatattaggtactggtgaattgtacctagattccataatgaaggaccttagggag
ctttactccgaggtggaagtgaaggtggctgatccagttgtctcattctgtgaaactgtg
gtggagtcgtcttcaatgaaatgttttgctgaaacacctaacaagaaaaataaaatcacc
atgattgctgaaccactggagagaggacttgctgaggatatcgagaacggtgttgtaagc
atagattggcctagaaagaaactaggtgaatttttccagaccaaatatgactgggatctt
cttgctgcacggtctatttgggcatttggacctgataagcaggggcctaacatcttattg
gatgatacactctcaagtgaagtcgacaagagcttgttgaatgctgttaaagattccatt
gttcaggggtttcaatggggagctcgggaaggacccctctgcgatgagcccattagaaat
gttaaattcaagatcgttgatgcgaagattgcaccagagccgttgcatcgtggaacaggt
cagattattccaactgcacgacgtgtagcctactctgctttccttatggcaacacccaga
cttatggagcctgtgtattatgtggagatccaaactcccatggattgtctctctgctata
tacaccgtgttgtctcgtaggcgtggacacgttactgctgatgttcctcaacctggaacc
cctgcctacattgtcaaggcatttttaccggttattgagtcctttggttttgaaacggac
ttgaggtatcacacccaagggcaggcattttgtctttcagtatttgatcattgggctatt
gtccctggggatcctcttgacaagagcattgttctacgaccactggagcctgccccaatc
caacatctggctcgtgagttcatggtgaagacaaggcgtagaaagggaatgagtgaagac
gtgagcatcaacaagttctttgacgaggctatgatggtggagcttgcacagcaggatgca
gatcttcacctgcagatgatgtag
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