Streptococcus viridans: NCTC3166_01218
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Entry
NCTC3166_01218 CDS
T08046
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svf
Streptococcus viridans
Pathway
svf03030
DNA replication
svf03410
Base excision repair
svf03420
Nucleotide excision repair
svf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC3166_01218 (ligA)
03410 Base excision repair
NCTC3166_01218 (ligA)
03420 Nucleotide excision repair
NCTC3166_01218 (ligA)
03430 Mismatch repair
NCTC3166_01218 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svf03032
]
NCTC3166_01218 (ligA)
03400 DNA repair and recombination proteins [BR:
svf03400
]
NCTC3166_01218 (ligA)
Enzymes [BR:
svf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC3166_01218 (ligA)
DNA replication proteins [BR:
svf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC3166_01218 (ligA)
DNA repair and recombination proteins [BR:
svf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC3166_01218 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC3166_01218 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC3166_01218 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC3166_01218 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
VED67396
UniProt:
A0A3S4M3B3
LinkDB
All DBs
Position
1:complement(1157872..1159818)
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AA seq
648 aa
AA seq
DB search
MKELVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQPNSPTHRVGGTIL
KGFEKYQHTYPLYSLQDAFSYEELVAFDQRVRKEFPAVTYVCELKIDGLSISLSYVEGVL
ETGATRGDGSIGENITENLKRVRDIPLVLPEPLTLTVRGECYMPRASFDAVNLSRQENGE
AEFANPRNAAAGTLRQLDTKIVAERKLATFLYQEASPTDQTSQEKVLAKLERLGFVVNPH
HKTATSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQEELGFTVKAPKWAVAYKFP
AEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKDDTVI
VYKAGDIIPAVLRVVMDKRVSEERLEIPSHCPSCQSKLLHFEDEVALRCINPRCPAQIKE
GLAHFASRDAMNITGLGPAVVEKLFAKELVQDVAGIYRLTVEELLQLEGFKEKSAQKLMD
AIQASKGNSAEKLLFGLGIRHVGSKASQLLLQEFHSIPALAEAEVEIIAAIDSLGMVVAE
SLKRYFAQEGSQLLLEELKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAK
LEALGAKVTGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctagtgacactcctgaatcactatgcagaagaatattatacaaaagatgct
ccgtccgtatcggattatgagtacgacaaactctatcgggaattggtcgcgttagaggaa
gcccatccggagttggtccagcccaacagcccaacccatcgggtcggaggaacgattctt
aaagggtttgaaaaataccagcatacttacccactttatagcttgcaggacgccttttct
tatgaagaattagtggcctttgatcaacgggttcgcaaagaattccctgctgtcacctat
gtatgtgaattaaaaattgatggcctgtctatttcactttcttatgtcgaaggagttctt
gaaacgggtgctacacggggggatgggagcattggagaaaatatcactgagaacctaaag
cgcgttcgcgatattcctctagtcttgccagaacctcttaccttaacagtacgcggagaa
tgttatatgccccgtgcatcttttgatgctgttaacttgtctcgccaagaaaatggggaa
gcagagtttgcgaaccctcggaatgcagcagctggtactcttagacagttggatacgaag
attgttgcagagcgaaaactcgcgaccttcctctatcaagaagcgagtccaactgaccaa
acgagtcaagagaaggtcttagctaaattagaacgactcggttttgttgtcaatcctcat
cacaagacagcgactagtatcgagcaagtctgggcctatattcaagaagtggcagccatg
cgcgaccaacttccttatgatatcgatggggtcgtgattaaagtgaatgatctagctatt
caggaagaactaggctttaccgtcaaggctcccaaatgggcagtggcttacaaattccca
gctgaggagaaagaagcaaaactcttgtcagttgattggacagttggtcggacaggagtg
gtgacaccaactgctaatttaactcccgttcagttagcagggacgacggtcagtcgggct
acccttcataatgtagattacattgctgagaaagatattcgcaaagatgataccgtcatt
gtctataaagcaggggatattattccagctgtcctacgggttgtcatggataagcgcgta
tcagaagagagattagagatacctagtcactgtccaagttgtcagagtaaactccttcat
tttgaagatgaagtagccttgcgttgtatcaatccccgttgtcctgctcaaataaaagaa
gggcttgcccattttgccagccgggatgccatgaatataacagggttggggccagctgtg
gttgaaaaactgtttgccaaagaactagtacaggatgtggcaggcatataccggctgaca
gttgaagaacttttgcaattagaaggttttaaagaaaaatctgcccagaagttaatggat
gctattcaggcgtctaaggggaattctgctgaaaaactattgtttggtctgggaattcgt
catgttggaagtaaggctagccagctcttgctccaggagtttcattccattccagcctta
gcagaggcagaagttgaaataattgcagcgatagacagtttaggaatggtggttgccgaa
agtcttaagcgttattttgctcaggaaggctctcaacttcttttagaagagcttaaggat
gctggggtaaacttagattacctggggcaaaaggtcgcagcagatgcaccattgtctggt
aaaacagttgtcttaacaggtaaactggaacgactaacacgttctgaagctaaggctaaa
ttagaagccttaggggcaaaagtcacaggctccgtgtccaagaatacagacctattagtt
gcaggtagcgatgcgggaagtaaattaagcaaagctcaggaattatcgatcgaaatacag
gatgaagcctggcttgaaagtttatag
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