Sturnus vulgaris (common starling): 106852378
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Entry
106852378 CDS
T08833
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106852378 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svg03000
]
106852378 (KDM2B)
04121 Ubiquitin system [BR:
svg04121
]
106852378 (KDM2B)
03036 Chromosome and associated proteins [BR:
svg03036
]
106852378 (KDM2B)
Enzymes [BR:
svg01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
106852378 (KDM2B)
Transcription factors [BR:
svg03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
106852378 (KDM2B)
Ubiquitin system [BR:
svg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106852378 (KDM2B)
Chromosome and associated proteins [BR:
svg03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
106852378 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
106852378 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
106852378
NCBI-ProteinID:
XP_014730425
LinkDB
All DBs
Position
Unknown
AA seq
1290 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDNLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEK
SQEPTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGITRPPPSLSPPKCIQMER
HVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKR
LWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCS
WIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSS
GKEQFCGSCHIRPDFSSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLS
YCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQV
TKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaagacggtacgatgagaacgaggacctctcggacgtggaagaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacact
cagaggggagttgagatgagcatgtctcagtttgtgaggtactacgagaccccagaggcc
caacgggagaagctctacaacgtcatcagcctggagttcagtcacaccaaactggagaac
attgtcaagcgccccaacgtggtggacttagtcgactgggtggacaatatgtggccacag
cacttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctacagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacc
ttcttcattccttcagggtggatacacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccggtatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgcgatgcccatctccaggaggagaaggatgac
aacttggataagaactctaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggaggctgcagggaggaaacaaaaagccacagtgatgaggtacctaaaa
agaactttgtctaatgagtcggatgacagcgtaaaatcaacgacccccacggactatccc
aaaacacccacggggtctccagccacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccgcaggctctcctggaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtggggcggcccaaggggaagctgggcgct
gcctctgccgtgaagctcgcggccaaccggagcacggcgggagcgcggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggagagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atagctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctg
aaggagcagaaaattaacagagacaacaaggaagtgccagatgctgccaaaaggaaaggg
gactgcgaggagactcccaggcggaaatcggaggaacattccaaaaaagctccagttgac
tcaatcctgaggagaaagtctgatgaagtgcatctgtggaggaaacggaaattcgagaag
tcccaggaacccacgatgagaaagaggcggcgatcgtggaaggccccggatgaccgaact
gccatgatcaaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaagcg
ccccccaggtccaaggatagtgaccagtctcggtccagctcgcccacagcagggcccagc
acggagggcgccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggctc
cccaataaggaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaacc
gagaacagccttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaac
gaggaacccaagcgtgcgttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcaccaccagctcatgcccagcctgcgcagcaccccc
cggggaataacccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcgg
cacgtcatccggcctcctcccatcagcccccctccggactcgctccccctggatgatggg
gcagcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcataga
gacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaaga
ttatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggc
attattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcag
ctgagttggcttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctca
tggatagcagtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtg
cagtgggcagaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggac
aaccggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttca
gggaaggagcagttctgtgggtcatgccacattcgcccggatttcagctcaggtcagatc
gacaaccggagcaagctacggaacatcgtggagctgcgcctggccgggctggacatcacg
gacgcctcgctgcggctcatcatcagacacatgcccctgctctccaaactcaacctcagt
tactgtaaccacgtcacagatcagtctattaacctgctgaccgccgtcggaaccaccacg
cgggattcgttaacggaaattaatttatcagactgcaataaggtcactgaccagtgcctg
tcttacttcaaacgttgtgggaacatctgccagatcgacctgaggtactgcaagcaagtg
acgaaggagggctgtgagcagttcatagcagagatgtctgtgagtgtccagttcgggcag
gtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
