Sturnus vulgaris (common starling): 106860340
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Entry
106860340 CDS
T08833
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg04622
RIG-I-like receptor signaling pathway
svg04623
Cytosolic DNA-sensing pathway
svg05164
Influenza A
svg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106860340 (DDX58)
04623 Cytosolic DNA-sensing pathway
106860340 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
106860340 (DDX58)
05168 Herpes simplex virus 1 infection
106860340 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
svg04054
]
106860340 (DDX58)
Enzymes [BR:
svg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106860340 (DDX58)
Pattern recognition receptors [BR:
svg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
106860340 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
106860340
NCBI-ProteinID:
XP_014743612
LinkDB
All DBs
Position
Unknown
AA seq
927 aa
AA seq
DB search
MTAEEKQNLRCYRRYIERSLNPVYVLSNMTDWLSDEVKERVRKEEEKGVTAAAALFLDAV
LLLEAEGWLRGFLDALVAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEIDPVA
IMPYINTCLIDRDCDEILQISEYRSKAAGITKLIECLCRSDKENWPKSLQLALDNAGYYN
ASELWNIREDNGKDVDSEMTDASENYFETMMTFSEEAECDNLGENLSPVSESAYESSSVY
KPKKARSYQIELAQPAIDGKNTLICAPTGSGKTFVALLICEHHLQNVPSGRKAKVVFLAT
KVPVYEQQKNVFRQHFERSGYSVQGICGETVANISIENVIRDSDIIVLTPQILVNSMGKG
VLSSLSIFTLMIFDECHNTTGNHPYNVLMTRYLDEKFDSSAKQLPQIVGLTASLGVGNAK
STDETVEHICTLCSYLDIQAISTVRENKQDLQRFGNKPETHIRWVKMRPQNHFADIISGL
MSETEMLMRKIYSVDTISQINKNYLGTQRYEQWIVSTQKKCRLLQLEDKEKESSICRDLF
ICTEHLRKFNDALIISEDARIEDALAYLNEFFTNVKNGPYTELEKQLTEKFQEKELELTA
LSKDESNENPKLEELACILDEAYRYNPETRTILFAKTRALVAALKKWIEANPLLSHIKPD
VLMGKGRRDHKTGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITACNLVVLYEYFG
NVTKMIQVRGRGRARDSKCILVTSKTEVVENEKLNRYKEEMMNAAIENLQNWDETTFART
ICRLQRREKVLRDSKKNETKPEVVEGKKNLLCGKCKVYVCSTDDIRIIKESHHTVLGDKF
KERYITKPHRKPVQFDDFQKKSKMHCRNAECQHDWGITVKYKTFDNLPVIKIKSFVLEDI
ETGTQMDFQKWKSINLSLKNFDEETFS
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggagaagcagaacttgcgctgctaccggcgctacatcgagaggagcctg
aaccctgtctacgtcctcagcaacatgacggactggctgtccgacgaggtgaaggagagg
gttcgaaaggaggaggagaagggggtgacggcggccgccgcgctgttcctggatgctgtg
ctgctgctggaggcggagggctggctccggggcttcctggatgccctggttgcagcaggt
tacactggattggcagaagcaattgaaaactgggacttcagcaagctggaaaaacttgag
ctgcacaggcagctgttgaagcggatagaagcaacaatgctagaaattgatcctgtagca
attatgccatacataaacacatgcctgatagacagggattgtgatgagatactgcagatc
agtgaatacagaagcaaagcagctgggataaccaaactcattgaatgcctctgtcgctct
gacaaggaaaactggcccaaaagtcttcagctggcgctggataatgcaggatattacaat
gcaagtgaactgtggaatataagagaagataatggcaaagatgtggatagtgaaatgaca
gatgcctcagagaattactttgaaaccatgatgacattttctgaagaagcagaatgtgat
aatcttggtgaaaatctctctccagtttcagaaagcgcctatgagtcttcatctgtttat
aaaccaaagaaggctcggagctaccagattgagcttgcacagcctgctattgatgggaaa
aacacattgatttgtgcccccacaggatctggaaaaacttttgtggcacttctgatttgt
gaacatcatttgcaaaacgttccctcaggacgaaaggcaaaagttgtcttccttgcaacc
aaagtgccagtgtatgagcaacagaaaaatgtattcaggcagcatttcgaaagaagtgga
tactccgttcaaggaatttgtggtgaaacagtagcaaatatctctatagaaaatgttata
cgggacagtgacatcatcgtgctaactccccagattcttgtgaatagcatggggaaaggg
gtccttagctccctctccatcttcactctgatgatatttgatgagtgccacaacactaca
ggcaaccacccttacaatgtgttgatgaccagatacctggatgaaaaatttgactcctct
gcaaaacagctgcctcagattgtaggtttaactgcttctcttggagttggtaatgccaag
agcactgatgaaactgtggagcacatctgtaccctctgctcctacctggacatacaggcc
atatccactgtcagagagaacaaacaagatctgcaaagatttggaaacaagccagaaaca
catatcagatgggttaaaatgcgacctcagaatcactttgcagacattatctcaggtctg
atgtctgagacagagatgttgatgaggaagatttactcagtggataccatctcccaaatc
aacaagaattaccttggaacacagagatatgaacaatggatagtttctactcagaagaag
tgtagactattgcaactggaagataaggagaaggagagcagtatttgtagagaccttttc
atttgtactgaacacttgcggaaattcaacgatgctctgattatcagtgaagatgcccgc
atcgaagatgctttagcctacctaaatgaatttttcacaaatgtaaaaaatggaccatat
acagagttggagaagcaactgacggagaaatttcaagagaaagagctagaactgactgcc
ctttcaaaagatgagtcaaatgagaatccaaagttggaagagcttgcttgtatcctggac
gaagcataccgctacaacccagagactcgcactattctctttgccaagacaagagcctta
gtagctgctttgaagaagtggatagaagcaaaccctttacttagccacataaagccagat
gtgttgatgggtaagggaagaagagaccataaaacaggtatgaccctgccaatgcagaag
ggtgtactggatgcattcagaaacgacaaagacatcagactgctaattgctacatctgtt
gctgatgaaggcattgatattactgcgtgcaaccttgtcgtgctctatgaatactttggt
aatgtcaccaaaatgatccaagtcagaggtcgtggaagggcaagagacagcaagtgcatc
cttgtgacaagcaaaacagaagtggttgagaatgaaaaactaaatcgttacaaggaagaa
atgatgaatgcagctattgagaatttacagaactgggatgaaacaacatttgcaagaacg
atatgtcgcctgcaaaggagggaaaaggtactacgagattccaagaagaatgaaacaaaa
cctgaagtagtggaagggaaaaaaaatcttttgtgtggaaaatgcaaagtgtatgtgtgc
agtacagatgacatcagaattataaaggaatctcatcacactgtcctgggtgacaagttc
aaggaacgttatataacaaaaccccacaggaaaccagttcagtttgacgattttcagaaa
aaaagcaagatgcattgccgaaatgctgagtgccagcatgactgggggatcacagtgaag
tacaagacatttgataatctaccagtgatcaaaatcaaaagctttgtactagaggacatt
gaaactgggacacaaatggattttcagaaatggaaaagtattaatttgtctttgaagaat
tttgatgaggaaacattcagctga
DBGET
integrated database retrieval system
