Sander vitreus (walleye): 144512655
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Entry
144512655 CDS
T11640
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
svit Sander vitreus (walleye)
Pathway
svit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
144512655 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svit03400
]
144512655 (lig4)
Enzymes [BR:
svit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
144512655 (lig4)
DNA repair and recombination proteins [BR:
svit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
144512655 (lig4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
144512655
NCBI-ProteinID:
XP_078099617
LinkDB
All DBs
Position
24:3908014..3917280
Genome browser
AA seq
911 aa
AA seq
DB search
MEGTSKSDAAGQPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILKDFIESWRKFHSALHK
DNPKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSEGNLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHFI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVNTDLNKVCQQLHNPSMSL
SEVSIGLFSAFKPMLAAMANIRSVEKQMGSSPFYIQTKLDGERIQLHKDGDVYKYFTRNA
FEYTQQFGGSPLEGSLTPHIHNNFKSHIVNCILDGEMMAYSATTDTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRYETLQTVFSPVKGRIHLVPKTDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDVLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGKASGKLASRHLHIDGDEPEKKKKRTQPAKPKKVIGIIDHFKPQDLSGVTKE
TDMFEDVEFCILNGTEDHPKAELEKGVASCGGVVVQNAGRDTYCVIAGVENMRVKNLVLS
DQHDVVWATWLMECLGRKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLR
EVFGRISDAQASAAANVSQVEQRCGWEDLPTSMFRPFEVYMDSYADIGDPKTAIPATCLD
IRALEFCYHGGSVVRKLEEGVTHVIITEETRLVDLRTLRRCFRRKFKIVRESWVTDSITA
GHLMNDTDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagcgatgctgcaggtcagccctctgttgctgctcaggttcct
ttccttcatctctgtaccacgttagagaaaatccagaagtctaaactccgtccagataaa
tccaagatcctcaaggatttcattgagtcgtggaggaagttccattctgccctccacaaa
gacaaccctaaaacaacagactctttctacccagccatgcgcctcatagtcccctccttc
gaacgagagcgtatggcgtatggcatcaaagaaagcatgttagctaaactctatattgac
gtattaggcctcccaaagaatggccctgaggccaataaactgttgaactaccgtgctccc
actacatcccagggagaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cggtgcaccagcgaaggaaacctcagcatcaaagaagtcaatgactttctggactcggtg
gctatcaacaatgctggcaagcagaaggatcttgtgaaaaagagtctgctgcatttcatc
acccagagctcggctctcgagcaaaagtggctcatcagaatgattctgaaggacatgaag
cttgggatcagcaaagaaactgttctccaagtcttccacccagacgctcctgagctttat
aatgtcaacacagacttaaacaaggtctgccagcagctccacaacccctccatgtctcta
agcgaagtttcaatcggactcttctctgcttttaagccgatgttggcggctatggcaaac
atccgcagtgtggagaaacagatgggaagcagccctttttacattcagaccaagctggat
ggagagcgtatacaactgcacaaagacggggatgtgtacaagtacttcacccgaaatgct
tttgaatacacccagcagtttggaggatccccactggagggctcactgacacctcacatc
cacaacaattttaaaagccacattgtgaactgtatcctcgatggtgagatgatggcgtac
agcgcaaccacagacaccttcatgcagaaagggagcaaattcgacatcaagagactcatg
gacgactccgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaatgaccag
aagcttggcaaggaaacgctgaagaagcgctacgagacccttcagacagttttcagtcca
gtcaagggaaggatacacctggtgccaaagacggatgccagaaccatgcaggaggtggtg
aatgctctgaatgacgccattgacagccgagaagagggaatcatggtgaaggaccctctg
tccatctacaaacccgacaaacggggggagggatggctgaaaataaagccagaatatgtg
gatggattgatggatgagctcgacgtgctgattgttggtggctactggggcaaagggaga
cggggtggtatgatgtcccacttcttatgcgccgttgccgaagctccaaagcctggcgag
aaaccctcggttttccacacactctgccgcatcggctctggctacaccatgaaggagttg
tatgacctcggtttaaagctcgccaagcactggaaagtctatcgtaaaaatgacccacca
gcatccatcttgtgcggaacagagaaacccgaagtttacatcgaaccctgcaactcggtc
atcctccaggtcagggcggctgaaatagtcggaagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcaaggcgtccgggaaactcgcctcgcggcacctt
cacatcgacggtgacgaaccggaaaagaagaagaagcgcactcagccagccaaacccaag
aaggtgatcgggattatcgaccactttaagccccaggacctatccggggttaccaaggag
acggatatgttcgaggatgtggagttttgtattctgaacggcacagaggatcaccccaag
gctgagctggaaaagggcgtggccagttgtggaggtgtcgtggttcaaaacgcagggcgg
gacacctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctagttttgtcc
gaccagcatgacgtggtgtgggccacctggctgatggagtgcctcggccggaaggaagtg
gtcccgtggcaaccgcgccacatgatccacatgtcgccctcgaccagggagcactttgcc
aaggagtacgacagctacggggacagctactttgtggacacagacgagcagcagctgcgg
gaggtgtttggccggatcagcgacgcgcaggcgtctgcggcggcgaacgtcagccaggtg
gagcagcgttgtggctgggaggatcttcccaccagcatgttcagacccttcgaggtttac
atggacagctacgccgacataggagaccctaaaaccgccatacctgccacctgcttggac
atcagggcgctggagttttgctaccacggagggagtgtggtgcggaagttagaggaagga
gtcactcatgtcattatcacagaggaaacaagacttgtggatttaaggactctgaggcgc
tgctttaggaggaagtttaagattgtaagagaatcatgggtgacggattcaatcacagca
gggcatctgatgaatgacactgactacctagtttaa
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