Streptomyces violaceusniger: Strvi_1850
Help
Entry
Strvi_1850 CDS
T01602
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03030
DNA replication
svl03410
Base excision repair
svl03420
Nucleotide excision repair
svl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Strvi_1850
03410 Base excision repair
Strvi_1850
03420 Nucleotide excision repair
Strvi_1850
03430 Mismatch repair
Strvi_1850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svl03032
]
Strvi_1850
03400 DNA repair and recombination proteins [BR:
svl03400
]
Strvi_1850
Enzymes [BR:
svl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Strvi_1850
DNA replication proteins [BR:
svl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Strvi_1850
DNA repair and recombination proteins [BR:
svl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Strvi_1850
NER (nucleotide excision repair)
GGR (global genome repair) factors
Strvi_1850
MMR (mismatch excision repair)
DNA ligase
Strvi_1850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Strvi_1850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AEM81586
UniProt:
G2P244
LinkDB
All DBs
Position
1749243..1751441
Genome browser
AA seq
732 aa
AA seq
DB search
MAGEQQSKIPAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPA
LRTPDSPTQKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAKELGSGAYHFLC
ELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRG
EVFLARERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDG
FDIDRLSQAYELLHEWGLPTAAHFKVVDTIEAVREYIAYYGDSEHRHSVEHEIDGAVVKL
DEIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPATCPEC
DTPLQPAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQPLEPTE
PPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVVTFFATQKGEAKKNALA
MLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEADEEELAAVEGVGST
IAASVKEWFAVDWHREILEKWRRAGVRLEEEGGEDEGPRPLESLTVVVTGTLQSYTRDGA
KEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQVKVPVLDEDGFGVLLEQGPDAAR
EVAMTPPEESAE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcgaagatccccgccgaggtgcgggagaggcacgccaggctc
gctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcgcccgtcgtcagc
gacgcggagttcgacaagctcatgcgcgagctggaggcgctggaggaggagacccccgcg
ctccgtacgcccgactcgccgacccagaaggtcgcgggggcgtacgaaacggatttcacc
gaggtcgagcatcgcgagcggatgctcagcctggacaacgcgttcgacgacgaggagctg
tcgacctgggcggaccgcatcgccaaggagctgggcagcggcgcgtaccacttcctgtgc
gagctgaaggtggacggcctcgcggtcaacctcacctatgagaacgggcggctgacccgc
gccgcgacccgtggcgacggccgcaccggcgaggacatcacccccaatgtgcgcacgatc
gccaagatccccaaccggctgacgggcgaccgcgtcccggcgctggtggaggtgcgcggc
gaggtcttcctggcccgtgagcggttcgaggagctgaacgccgggctggtggaggcgggc
aagccgccgttcgccaacccccggaacgcggcggcgggttcgctgcgccagaaggacccg
aaggtcaccgcctctcggccgctggacatggtggtgcacggcatcggtgcgcgcgacggc
ttcgacatcgaccggctgtcgcaggcgtacgagctgctgcacgagtgggggctgcccacc
gccgcccacttcaaagtggtggacacgatcgaggccgtgcgcgagtacatcgcgtattac
ggggacagcgagcaccggcactcggtggagcacgagatcgacggcgcggtcgtcaagctg
gacgagatcccgctccaggggcggctgggctccacctcgcgggcgccgcgctgggcgatc
gcctggaagttcccgcccgaggaggtcaacaccaagctggtcgacatccgggtgggcgtg
gggcgcaccgggcgggtgacgccttatgcggtggtcgagccgatcacggtcgcgggttcg
gaggtcgaattcgcgacgctgcacaaccaggatgtcgtcaaggcgaaaggtgtgctgatc
ggtgacaccgtggtgctgcgcaaagcgggcgacgtcattccggaaatcctgggcccggtc
gtcgatctgcgggacggcagcgagcgggaattcgtgatgccggccacctgccccgagtgc
gatacgccgctgcagcccgccaaggagggcgatgtcgatctgcggtgtcccaacagccgg
tcctgcccggcgcagctccgcgagcgcattttctatctcgccgggcggaaatccctggac
atcgagaacctcggctatgtcgccgccgccgccctcactcagccgctggaaccgaccgag
ccgccggtgaaggacgagggtgatctgttcgatctgaagatcgaacaattgctgcccatt
cggtcgtatgtactggacccggacagcggactgcccaagcgcgatccggagaccggcgag
gcgaaggtcgtcaccttcttcgccacccagaagggcgaggcgaagaagaacgccctggcg
atgctggccaatatcgaggccgccaaggagcgcccgctggcccggatcatcaccggcctt
tcgatccgtcatgtcggccccgtcgccgccaccgcactggcccgtgaattccgctcgctg
gaccggatcgccgaggcggacgaggaggagctggcggccgtggagggggtcgggtcgacc
atcgccgcctcggtcaaggagtggttcgcggtcgactggcaccgcgagatcctcgagaaa
tggcggcgggccggggtgcggctggaggaggagggcggcgaggacgagggcccccgtccg
ctggagagcctcaccgtcgtcgtcaccggaacgctccagtcgtacacgcgagatggggcc
aaagaggcgctgcagagccgtggtgccaaagtcaccggatcggtttcgaaaaagaccgat
ttcgtggtagtcggcgacaatccgggctcgaagtacgacaaagccatgcaggtgaaggtt
cccgtgctcgatgaggacggatttggcgtcctcctcgaacagggaccggacgcggcgaga
gaggtcgcgatgacgcctccggaagagtccgcggagtag
DBGET
integrated database retrieval system
