Shewanella vesiculosa: KDH10_002446
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Entry
KDH10_002446 CDS
T08322
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
svm
Shewanella vesiculosa
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svm03009
]
KDH10_002446 (rlmC)
Enzymes [BR:
svm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
KDH10_002446 (rlmC)
Ribosome biogenesis [BR:
svm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KDH10_002446 (rlmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
UJL41476
LinkDB
All DBs
Position
complement(2853430..2854566)
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AA seq
378 aa
AA seq
DB search
MKCDYFERGDCLSCRNIQLPMVEQVNVKQQKLTDLFRDMSVKQWFSPILSAESGFRNKAK
MVVLGAAHEPILGLVNPQGEPISLCDCSLYPKDMQLLLHRLERFVQQAGVPPYRVDKAKG
ELKFILLTRSQSSGQFMLRFVLRSDNAIARIERELPQLLQEFPQITLVSANIQPIHMAIL
EGEREIFLTETTRLEEQLNHVPLFIRPKSFFQTNPDVAAQLYQIAREWVTEFTPNYIWDL
FCGVGGFGLHCADHQIRLTGIEIESEAIECAILSASKLGLTQVDFSALDSTHFAQGQSAE
VKPDLIIVNPPRRGLGKTLCDSLSEFAPKAIVYSSCNPHTLMTDLACITGYEITKVQMFD
MFPHTDHFEVLVMLELLQ
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatgtgactattttgagcgtggcgattgtttgtcatgccgcaatattcaactgcca
atggttgagcaagtaaatgtaaaacagcaaaaattaacggatttgtttcgtgacatgtcg
gttaaacaatggttttcaccgatattaagtgcagaatctggctttcgtaataaagccaaa
atggtggtattaggtgccgctcatgagcctattttaggattggttaatccacaaggggag
ccgatcagtttatgtgattgttcgttataccctaaagatatgcaattgttattacaccgt
ttagagcgatttgtgcagcaagcgggtgtgcctccttatcgagtcgataaggccaaaggt
gagctcaaatttattttgctgactcgtagtcaaagtagtggccagtttatgctgcgtttt
gttttgcgtagcgataacgcgatcgcgcgaattgaacgagaattaccgcagttactgcaa
gaatttcctcaaattaccttagtgtcggctaatattcagccgattcatatggctatttta
gaaggtgaaagagaaatctttttaaccgaaactacgcgcttagaagaacaactgaatcat
gtgccgttatttattcggccaaaaagcttttttcaaacaaatcctgacgttgcggcgcag
ttgtatcagattgcaagggagtgggttactgagtttacacctaactatatttgggactta
ttctgtggtgtcggcggttttgggttgcattgtgctgatcatcaaattcgcttaacgggt
atagagattgaatcagaagcaatagaatgtgccatcttgtcagccagcaaacttgggctg
acacaagtggattttagtgctcttgattcaacccattttgcacaagggcaatcagctgaa
gtcaaacccgatcttattattgttaacccaccgcggcgaggattaggtaaaaccttatgc
gattcattgagcgagtttgcgcccaaagccattgtgtattctagctgtaatccacacacc
ttaatgacagatttagcctgtattacgggttatgaaattaccaaagtacaaatgtttgat
atgtttcctcatacggatcattttgaggtattggttatgttagagctgctgcaatag
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