Shewanella violacea: SVI_1663
Help
Entry
SVI_1663 CDS
T01206
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svo
Shewanella violacea
Pathway
svo03030
DNA replication
svo03410
Base excision repair
svo03420
Nucleotide excision repair
svo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVI_1663 (ligA)
03410 Base excision repair
SVI_1663 (ligA)
03420 Nucleotide excision repair
SVI_1663 (ligA)
03430 Mismatch repair
SVI_1663 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svo03032
]
SVI_1663 (ligA)
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_1663 (ligA)
Enzymes [BR:
svo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SVI_1663 (ligA)
DNA replication proteins [BR:
svo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SVI_1663 (ligA)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SVI_1663 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SVI_1663 (ligA)
MMR (mismatch excision repair)
DNA ligase
SVI_1663 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SVI_1663 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BAJ01634
UniProt:
D4ZIY5
LinkDB
All DBs
Position
1902230..1904281
Genome browser
AA seq
683 aa
AA seq
DB search
MQNDKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLET
AHPEYCFPDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRINDKTDTAPT
FCCEPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGENFPPLLE
VRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGFYAYALGV
VEPETWELADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSLAYEIDGV
VIKVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIF
VGGVTVSNATLHNADEIARLGVKIKDTVIVRRAGDVIPQIVAIVADKRPDDASEIEFPTT
CPVCDSLVERLEGEAVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKEL
VESPADLFKLSASAMTMLDRMGLKSATNLVKAIEVAKQTTFSRFLYALGIREVGEATAAN
LASYFKSLDKLKAANAEEFIKVDDVGIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIE
EVAEESLSLKGQTWVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKL
TKAQDLGIKILDEEGLLAVLAGE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgacaagattcaagaccatgcttcattcaatatccaagcagtggctcaagag
atagccgagcttaccgatatcttaaatggccataactattgctattacgttgatgatgct
cctagcattccagatgctgaatatgaccgtttgcttaagcagttaaaagtactggaaaca
gcgcacccagaatattgttttcctgactcaccgacccagagagtgggtggtgtggccctg
gccaagttcgatcaggtagtgcaccttaaacctatgctcagcctggacaatgtctttagt
gatgaagagtttgaagctttttataatcgaattaatgacaaaacggataccgcgccgaca
ttttgttgcgaacccaaactcgatgggctggctgttagcatcttataccgagatggtatc
tacgagcgagcagggacccggggcgatggcaaaaccggcgaagacattaccgagaatgtc
cgtaccatactctctattccaatgaagctgcggggcgaaaactttccgccgctattggag
gtacgtggtgaagtgatcatgcctaagcaagcatttgattcactgaatgagcgtgccaga
gccaaaggcgagaaagagtttgttaacccacgtaacgcagcggctggtagtttgcgtcaa
ttagatagcaagataactgctagtcgagcactgggtttctacgcatatgcgctcggtgtg
gttgagcctgaaacttgggaattggccgatcatcattatgaccaattgatgcaacttaaa
tcttggggtttcccggttagcgccgaggtgaagcaatgtgatagcgtcaaggatgttatc
gcttattacacagatatcatgactcgccgcagttcattagcctatgaaatagatggcgtg
gtgatcaaggtcgataatattgaccagcaagccatgttaggtttcgttgccaaggcgcct
agatgggcaacagcgtttaagtttccggcacaagaggagatgactttactcgaaggcgtt
gattttcaggtcgggcgcactggcgccgtgaccccagtggccaggttaaaaccaatcttt
gttggcggcgtcacggtatcgaatgcgacgctgcacaacgccgatgagatcgccagatta
ggcgttaaaattaaggatactgtcattgttcgccgcgctggcgacgtgatcccacaaatc
gtggctattgtggctgacaaacgcccggatgatgccagtgagatagaattccccacaaca
tgcccagtgtgtgacagtttggtcgagcgtcttgaaggcgaggcggttgctcggtgtacc
ggtggactgttttgtgaagctcaacgaaaagaggcaatcaagcatttcgcttctcgcaaa
gccttagatatcgatggcatgggcgataaagttgtcgagcagcttatcgataaggaatta
gtcgagagccccgcagacctgtttaagctgtcagcatcggccatgaccatgttggaccgc
atgggacttaagtcggcgaccaatttggttaaggccatcgaggtggcaaaacagacaaca
ttttcccgtttcctctatgcacttggaatacgtgaagtcggtgaagcaaccgctgctaat
ctagcgagctattttaagagtttagataagcttaaagccgccaatgccgaggagtttatc
aaggttgatgatgtcggtattattgtggctcagcatttgacccatttcttcgctcaggaa
cataatttagcggttgtggatagtcttatccaagcaggggtgaactggcccgcgattgaa
gaggtcgctgaagagtctttgtcgcttaaaggacagacctgggtgttaactggcaccttg
acgcagcttaaccgcaacgatgctaaggcccagttacaggctttaggggctaaggtcgca
ggtagcgtgtctaaaaataccagctgtttagtggcgggagaggcggcaggatctaaactg
accaaggctcaggacctaggtataaagatactggatgaagagggcttgctcgcggtgctc
gccggggaataa
DBGET
integrated database retrieval system
