Stratiformator vulcanicus: Pan189_15230
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Entry
Pan189_15230 CDS
T09804
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svp
Stratiformator vulcanicus
Pathway
svp03030
DNA replication
svp03410
Base excision repair
svp03420
Nucleotide excision repair
svp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan189_15230 (ligA)
03410 Base excision repair
Pan189_15230 (ligA)
03420 Nucleotide excision repair
Pan189_15230 (ligA)
03430 Mismatch repair
Pan189_15230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svp03032
]
Pan189_15230 (ligA)
03400 DNA repair and recombination proteins [BR:
svp03400
]
Pan189_15230 (ligA)
Enzymes [BR:
svp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan189_15230 (ligA)
DNA replication proteins [BR:
svp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan189_15230 (ligA)
DNA repair and recombination proteins [BR:
svp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan189_15230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan189_15230 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan189_15230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan189_15230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QDT37153
UniProt:
A0A517QZZ1
LinkDB
All DBs
Position
complement(1895297..1897336)
Genome browser
AA seq
679 aa
AA seq
DB search
MSETVRQEIEELRRKIEHHNHLYYSKAQPEISDREFDRQMQRLIDLEQEHPEYDDPNSPS
HRVGGEPIDEFQTVEHRVPMLSIDNVFDLNRLADFDDRVRRGLDGADFTYTIEYKIDGVA
LAVVYENGTLATAVTRGDGQRGDDVTHNARTIRDLPLKLQSINLQSADLPELIEIRGEAY
IPNSDFADLRAEQEKRGETVYANPRNLTAGSIKLLDPKVCAERKLRFFAHGIGAYEGIDF
KSHQVFLEKLKAFGVVATPQVRHAKTLEEAQSKIEEMIEEIPSLDFEVDGLVLKVDRFDQ
RRTLGNTSKSPRWLVAYKWEKYEATTTLEDVQFQVGKTGRVTPVAFLAPVEIAGTTVSRA
SLHNADEIARLDLHEGDEVVVEKAGKIIPHVLRVAKEKRKKNAKAIRFPANCPVCDTKLQ
RDDGEVDFRCPNPNCPARLKGSLEFFASRTAMDIDGLGEKLIDQLIANDLVKSLPDLYRL
KDRRDDLLNLERMGEKSVDKLIGSVEKSKSRPMWRLLTGLNIRHVGQSNARVLAEELGTL
DEIMKQSTESLAAIPEIGDVIARSVHDFFEAERNRKLIEEFRDLGLDFGQPVKQRPDRST
GPLAGKTVVATGSLERFTRDEIKELIRDHGGKSSSSVSKKTDYVVAGTDAGSKLTKANEL
GVKVLKEEEFCELIGLDGG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagaccgttcgtcaggaaattgaagagctccgtcgaaagatcgagcaccacaac
cacctctactactccaaagcacaaccggagatttccgaccgcgagttcgatcgccagatg
cagcggctgatcgatctggagcaggagcaccccgaatacgacgatccgaacagcccctcg
catcgcgtcggcggtgagccgatcgacgaatttcaaaccgtcgagcatcgcgtgccgatg
ctgtcgatcgacaacgtgttcgatctcaacaggctggccgatttcgatgaccgcgtccgc
cgcggcctcgacggggccgacttcacctacaccatcgaatacaaaatcgacggcgtcgcc
ctcgcggtcgtctatgaaaacggaacattggcgaccgccgtgacgcggggcgacgggcag
cggggggacgacgtcacgcacaatgcccgcacgatccgcgatttgcctctcaagctgcag
tcaatcaatctgcaatcagccgacctgcccgaattgatcgaaattcgcggcgaggcttac
atccccaattccgacttcgccgacctccgtgctgagcaggagaagcgcggcgaaacggtt
tacgccaacccccggaatttgactgcgggctcaatcaagctgctcgatcccaaagtctgt
gcggagcgcaagcttcgattcttcgcccacggtatcggggcgtacgagggcatcgatttc
aaatcgcaccaagtctttctggagaaactcaaagcgttcggcgtggtggccacaccgcag
gtccgtcacgcaaagacacttgaagaggctcaatcgaagatcgaagaaatgatcgaggag
attccgtcgctcgacttcgaagtcgacggattggttctcaaagtggatcgcttcgaccaa
cgccgcacgcttggcaatacgtcgaaaagcccgcgctggttggtcgcctacaagtgggaa
aagtacgaggcaacgaccacgctcgaggacgtgcaatttcaggtcggcaagaccggacgt
gtgacaccagttgcgtttcttgcacccgtcgagatcgccggcacgaccgtttcccgggcc
agcctgcacaatgccgatgagatcgcgcggcttgatttgcacgaaggcgacgaggtcgtg
gttgagaaagccggtaaaattattccgcacgtcctgcgggtcgccaaagagaagcgaaag
aagaacgccaaggcgatccgcttccccgcgaactgcccggtttgcgatacgaagctgcaa
cgagatgacggggaagtcgacttccgttgccccaacccgaactgccccgcccggctgaaa
gggtcgcttgagtttttcgcctcgcggacggcgatggacatcgacggccttggcgaaaaa
ttgatcgaccagctcatcgccaacgacctcgtcaagtcgctgcccgacctgtaccgcctc
aaagaccgccgcgacgatctcttgaatcttgagcggatgggcgagaagtcggtcgataag
ttgattggttcggtcgaaaagtcgaagtcgcgtccaatgtggcggctgctgaccggtctg
aacattcggcatgtcggtcaaagcaatgcccgcgtcctggccgaggaactcgggacgctg
gacgagatcatgaaacagtcgaccgagtcgctggccgcgattccggaaatcggcgatgtc
atcgcccgctcggtgcacgactttttcgaagccgagcgaaatcgaaaactgatcgaagag
ttccgcgacctcggcctcgatttcggccaaccggtcaagcagcgacccgaccgcagcacc
ggacccctcgccggcaaaacagtcgtcgccaccggcagcctcgaacgcttcacgcgtgac
gagatcaaggaactgatccgcgatcacggtggcaagtcatcaagcagcgtttcgaagaaa
accgactacgtcgtcgcaggaacagatgccgggagtaagctgaccaaggccaacgaactt
ggggtgaaagtgttgaaggaagaagagttttgcgagctgattggtcttgatggtggttaa
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integrated database retrieval system
