Streptomyces viridifaciens: CP971_11410
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Entry
CP971_11410 CDS
T06960
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03030
DNA replication
svr03410
Base excision repair
svr03420
Nucleotide excision repair
svr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP971_11410 (ligA)
03410 Base excision repair
CP971_11410 (ligA)
03420 Nucleotide excision repair
CP971_11410 (ligA)
03430 Mismatch repair
CP971_11410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svr03032
]
CP971_11410 (ligA)
03400 DNA repair and recombination proteins [BR:
svr03400
]
CP971_11410 (ligA)
Enzymes [BR:
svr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP971_11410 (ligA)
DNA replication proteins [BR:
svr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP971_11410 (ligA)
DNA repair and recombination proteins [BR:
svr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP971_11410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP971_11410 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP971_11410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP971_11410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
SnoaL_2
HHH_8
HHH_3
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QEU99814
LinkDB
All DBs
Position
complement(2646329..2648617)
Genome browser
AA seq
762 aa
AA seq
DB search
MTAVEGWEDVPAEVRRRHAELAQEITDHRARYYEQDAPVVSDAEFDALMRELEAMEAEHP
ALVTPESPTQRVGGAPTALFAAVEHRERLLSLDNAMDDEELGAWADRVATELHGIDYHYL
CELKVDGLAVNLTYENGQLVQAATRGDGRVGEDITANIRTIKEIPHRLRGDNVPELVEIR
GEVYFPTEEFLALNASFSEENERRRQENEERAKEGKRPRAMIRLFMNPRNAAAGSLRQKD
PHVTASRPLHMVVHGIGARVGFDIDNQSHAYQLLHDWGLPTARHNKVVGTLAEVRAFIKH
FGEQRHSVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGKLAEIKVGIG
RTGRATPYAVLAEPVKVAGSMVQYATLHNQEIVKAKDVLLGDTVVLRKAGDVIPEILGPV
YDLRDGTEQAFVMPSHCPECGTELRPMSEGDIDLRCPNAQHCPAQIRERIAFLGGRSCLD
VEGLGYVAATALTQPLEPAEAPVRNEGDVFGLTEEQLLPIKVLVRDQKTGMPKLDDRTGK
EKEVFFFATTKGEPKKSLRALLDNLEGAKERPLWRFLNGLSIRHVGPVAAQELAREFRDL
DRIFSATEEELAAVEGVGPTIARSIKEWFEEEWHRDILEKWRAAGVRFTEEFVDEEAAER
PLEGLTVVVTGTLSGHTRDGAKEALTSRGAKVTGSVSKKTDFVVAGDNPGSKYDKAVQLG
LPVLDDAGFAVLLSDGPSAARAHLGLPEPEEAAGPAGTPAEG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgacggctgtcgagggctgggaggacgttccggcggaggtgcgccgacggcacgccgag
ctggcgcaggagatcaccgaccaccgtgcccggtactacgagcaggacgcaccggtcgtc
agcgacgccgagttcgacgcgctgatgcgcgagctggaggcgatggaggccgagcacccg
gccctggtgacgccggagtcgccgacccagcgggtcggcggcgcccccaccgcgctgttc
gcggcggtcgagcaccgcgagcgcctgctcagtctcgacaacgcgatggacgacgaggag
ttgggcgcctgggcggaccgggtcgccaccgagctgcacggcatcgactaccactacctg
tgcgagctcaaggtggacggcctggccgtcaacctcacctacgagaacggccagttggtg
caggcggcgacccgtggcgacggccgggtcggcgaggacatcaccgccaacatccgcacc
atcaaggagatcccgcaccggctcaggggcgacaacgtcccggagctggtggagatccgc
ggcgaggtctacttcccgaccgaggagttcctcgcgctcaacgcctccttctcggaggag
aacgagcgccgccggcaggagaacgaggagcgcgccaaggagggcaagcggccccgggcg
atgatccggctgttcatgaacccccgcaacgcggccgccggttcgctgcgccagaaggac
ccgcacgtcaccgcctcccggccgctgcacatggtggtgcacggcatcggtgcccgggtc
ggcttcgacatcgacaaccagtcgcacgcctaccagctgctgcacgactggggcctgccc
accgcccggcacaacaaggtcgtcggcacgctggccgaagtccgggccttcatcaagcac
ttcggcgagcaacggcactcggtcgagcacgagatcgacggcgtcgtggtcaaggtggac
gagatcgcgctgcagggccggctcggcgccacctccaagtccccgcgctgggcgatcgcc
tggaagtacccgccggaggaggtcaccggcaagctcgccgagatcaaggtcggcatcggc
cgcaccggccgggccaccccgtacgcggtgctggccgagccggtgaaggtggccggctcg
atggtgcagtacgcgacgctgcacaaccaggagatcgtcaaggccaaggacgtgctgctg
ggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggcccggtc
tacgacctgcgggacggcaccgagcaggccttcgtgatgccctcgcactgcccggagtgc
ggcacggagctgcgccccatgtccgagggggacatcgacctgcgctgccccaacgcccag
cactgcccggcgcagatccgggagcggatcgccttcctcggcgggcggtcctgcctggac
gtcgagggcctcgggtacgtcgcggccaccgcgctgacccagccgctggagccggccgag
gcgccggtgcgcaacgagggcgacgtcttcggcctgaccgaggagcagctgctgcccatc
aaggtgctggtgcgcgaccagaagaccggcatgcccaagctggacgaccggaccggcaag
gagaaggaggtgttcttcttcgcgaccaccaagggcgagccgaagaagtcgctccgggcg
ctgctggacaacctggagggggcgaaggagcgcccgctctggcgcttcctcaacggcctg
tcgatccggcacgtcggcccggtcgcggcccaggagctggcgcgggagttccgtgacctg
gaccggatcttctcggccaccgaggaggagctggccgcggtcgagggggtcgggccgacc
atcgcccgctcgatcaaggagtggttcgaggaggagtggcaccgggacatcctggagaag
tggcgcgccgcgggcgtccgcttcaccgaggagttcgtggacgaggaggcggcggagcgc
ccgctggaggggctgacggtggtcgtgacgggcacgctgtccggccacacccgggacggc
gccaaggaggcgctgacctcgcgcggagcgaaggtgaccggttcggtttcgaaaaagacc
gattttgtggtcgctggcgacaacccaggatccaagtacgacaaggccgttcagctcgga
ctgccggtcctggatgacgcgggcttcgccgtgctgctgtccgacggaccgtcggccgcc
cgtgcccacctgggacttccggagcccgaggaggccgccgggcccgccgggacccccgcc
gagggctga
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integrated database retrieval system
