Setaria viridis (green foxtail): 117835260
Help
Entry
117835260 CDS
T07951
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117835260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117835260
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117835260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
AAA
ORC-CDC6-like
nSTAND3
ATP-synt_ab
AAA_23
AAA_24
AAA_15
Motif
Other DBs
NCBI-GeneID:
117835260
NCBI-ProteinID:
XP_034570518
LinkDB
All DBs
Position
9:complement(45675212..45677823)
Genome browser
AA seq
323 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGQRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVAGVDPKRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARSNLLTYLKKECEERGATIIYATHIFDGLDDWPTHIIYIAHGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRRRKERKEKGLPEFDKVVEGSRVIGDPAKSAARVVNNGWAA
GRLTSTIAGEENFVFSSNSVLRQ
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagccacctctccttcacctacccgggcatcgacggccgc
ccgccgcccggcgcgccgccgcttatcgaggacgtctgcttctccctcgacgccggccaa
cgatgccttctcctcggctccaacggcgcaggcaagacgacgatactgaagatactgggc
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtccgctttccacgac
acggcgctcacctcctccggcgacctctgctacctcggcggcgagtggagacgcgacgtg
gcttttgccggctaccaggtgaatattcagatggatatatcggcggagaagatgattttc
ggtgttgctggtgttgatccaaagaggagagatgagcttatcaagattttagacatcgac
cttgcctggcgcatgcacaaggcatcagatggtcagaggagacgagtccagatttgcatg
ggacttctcaagccattcaaggttctccttcttgatgagatcacagttgacctagatgta
ttggcaagatcaaatctgttaacatatcttaagaaggaatgcgaggaaagaggtgcaaca
atcatctatgccacacatatttttgatggtcttgatgattggccaacacacattatttac
attgctcatggaaagctgcagttagcactgcctttggaaaaggtgaaagaaatgagccag
ttatctctcatgagaactgtggagagttggttgaggaaagaaagagacgaggacaggagg
aggagaaaggagcgaaaggagaaagggctcccggaattcgacaaagttgttgagggtagc
cgggttataggtgatccagcaaagagcgctgccagagtcgtaaacaacggttgggcagca
ggacggctcacctcaacaatcgcaggagaggagaacttcgttttcagctctaacagcgtt
cttagacaatga
DBGET
integrated database retrieval system
