Setaria viridis (green foxtail): 117837817
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Entry
117837817 CDS
T07951
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
117837817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117837817
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117837817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
117837817
NCBI-ProteinID:
XP_034573483
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Position
9:complement(3350639..3359907)
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AA seq
989 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPVDLRRPNPNGIEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFDYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLAQKEKSEAIDSNVITPGTQFMFVLSTALQYYIQ
LRLNHTLGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVISMPGQQEKCFLCGQVGHLAAECRGPSQVDSAVELPPIHKKKYQF
LHIWVLREYLAKDLEIVDAPFKINFERLIDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MSIYRAEFISMGGYLTDGGEVVLDRVEHFIQSVAFNEEQIFQKRARIQQARENNEERNKI
QRESTEENQYVDKVKLGEPGYRERYYAEKFKEEAESKPIDQVRRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKDLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
YGDLMTDPNSPLKSFYPKDFEIDMNGKRFAWQGVAKLPFIDETRLLAETRKLEDTLTEEE
KFRNTTMFDIIYVRETHPLTAQIAFLYRMYNHLPRTDPYVIPIDPAASGGMNGFLCLSER
NWYSITVTSPVKCFNGIAQNRVLNATYLNPQYHKHIPEPPVGVIVPGKILKPSDFKPFPV
LWHEDNSRRQARERPQVSGALSGSLLGQAAHRLVKNSLQIKSGSAAGLLDMPYRGAPYGP
GNRPRPAGPLGYERGFVDNPHHAHTSRSVPNSHPQFFGDAQANRQPMRILERPNSGSHEA
GIHASMSKLTIHEGPRLHQNNRMQNSGYWPNQPHPNHYAGPPPQQPMQNISFTPQRPFQT
GGFPQQRPVNGVPPPLPPSNWIGKQPTGGPPGVPAKHDPRTAPDRQLKQDNPRSQQDKRQ
QATKVYRVKTQATNGNGLSESGKQEEPAA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctaccggtggctggcggaccgctacccgctgacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggcgccttcgtccccgtcgacctccgc
cgccccaaccccaacggcatcgagtttgacaacctctacctcgacatgaatggcatcatt
cacccctgcttccaccccgaaggccggccggcgcccaccacctatgacgaggtgttcaag
tcgatttttgattacatcgaccacctcttcggcctcgtccgccccaggaagctcctctac
atggccattgatggtgttgctccaagggcaaaaatgaatcagcagaggtccaggcgattc
cgggctgcaaaggacgcagctgatgcggcagccgaggaggagaggctgaggaaggaattt
gaggcagagggtaggactctagcccagaaggagaagtcagaggcaatcgactcgaatgtc
attactcccgggacgcagttcatgtttgtactatctacggcgcttcagtactacatacaa
ctgagattgaatcatacacttggatggcagtctgtcaaggtaatattgtctgattccaat
gtccctggtgagggagagcacaaaattatgtcatacatccgcctgcagcgcaatcttcct
ggctttgatcccaatacacgtcattgcttatatggcctggatgctgatttgattatgctt
gctctggcaactcacgaggtccacttctcaattttaagagaggtgatctccatgccaggg
caacaagaaaaatgtttcctgtgcggtcaagttgggcatttggctgctgaatgcagaggc
cctagccaggttgatagtgctgtggagctacctcctattcataaaaagaaataccagttt
cttcacatatgggtgttgcgtgaatacctggcaaaggatttggaaattgtagatgctcca
ttcaagataaactttgaacggcttatcgatgattttgtgtttatgtgtttctttgttggc
aacgactttctgcctcacatgccgactttggaaattcgtgagggtgccattaatcttctg
atgagtatctacagggcagagttcatatcaatgggtggttacctgaccgatgggggcgag
gttgtattggaccgtgtggaacatttcattcagtccgttgctttcaatgaagaacaaatt
ttccagaaacgtgcacgcattcaacaggcacgcgagaacaatgaagagagaaacaaaata
cagagagaaagtaccgaggagaatcaatatgtggacaaggtcaagttaggagagccagga
tacagggagcggtactatgctgaaaagtttaaagaagaggcagaatcaaaacccattgat
caagttcggagagatgtcgtccagaaatatgtggaaggtctttgctgggttatgagatac
tactatcaaggtgtttgttcatggcagtggttctatccatatcattatgcgccttttgca
tctgacctaaaagacttggctgaattggagattacctttttcttgggtcaacctttcaag
ccatttgatcagcttatgggaacactaccagctgccagctccaatgcactgcccaagtac
tatggggatttaatgactgatccaaattcacctttgaagtctttctatcccaaagatttt
gagatagacatgaatggaaaacgttttgcatggcagggtgttgcaaagttaccttttatt
gatgaaacacgtctgcttgccgaaacaagaaaactagaagatacattgacagaagaagag
aaattcaggaacacgacaatgtttgacataatatatgttcgggaaactcatccattgact
gctcagattgcgttcctgtatcggatgtacaaccatctaccaagaacagatccttatgtt
attcccattgatcctgctgctagtggtggaatgaatgggttcctttgtttatctgaaagg
aactggtatagcatcactgtaacatctccagttaagtgcttcaacggcattgcccaaaac
agagttttgaatgctacgtatcttaatcctcagtatcacaaacacatcccggagccccca
gtgggggtcatcgtacctgggaagatattgaagcctagtgatttcaaaccctttcctgtg
ttgtggcatgaagataatagtcgtcggcaagcaagagaaaggcctcaggtttctggagct
ttgtcaggttctctcttaggacaagctgcacaccgtctggtgaaaaactcccttcagatc
aaatctggtagcgctgctgggctacttgatatgccatatagaggtgcaccctatggccct
ggaaacagaccaaggcctgctggaccattgggatatgagaggggttttgtggacaaccca
caccatgcacacacgtccagaagtgtcccgaactctcatcctcagttctttggtgatgct
caagctaacagacagcctatgcggatactggaacgtccaaactccggaagccatgaagct
ggtatccatgcatcaatgtcaaaactgacaatccatgaagggccaaggcttcatcagaat
aacaggatgcagaattccgggtactggcccaaccaaccacatcctaatcactatgctgga
cccccacctcagcagcctatgcagaatatcagtttcacacctcagcggcctttccaaact
ggaggattcccgcagcagcgaccagtaaatggggttccaccaccattacctcccagtaac
tggattggcaagcaaccaactggaggccccccaggtgttcctgcaaagcatgatccaagg
acagctccggatagacagcttaagcaggataacccaagatcgcaacaggataagagacaa
caggctaccaaggtataccgtgtcaaaacccaagctactaatggtaacggtttgtcagag
tcaggtaaacaggaagaacccgcagcataa
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