Setaria viridis (green foxtail): 117838303
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Entry
117838303 CDS
T07951
Name
(RefSeq) E3 ubiquitin-protein ligase RZFP34
KO
K10144
RING finger and CHY zinc finger domain-containing protein 1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117838303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117838303
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117838303
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117838303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zinc_ribbon_6
zf-CHY
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-C3HC4_4
DmmA-like_C
Motif
Other DBs
NCBI-GeneID:
117838303
NCBI-ProteinID:
XP_034574163
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All DBs
Position
9:complement(53895564..53898408)
Genome browser
AA seq
265 aa
AA seq
DB search
MDADTGPVQYGCVHYKRKCKIRAPCCGEIFDCRHCHNEAKDSLEVNNHERHVVPRHEIKL
VICSLCNKEQDVHQDCSNCGACFGKYFCAKCNFFDDDVSKNQFHCDGCGICRTGGAENFY
HCGKCGCCYTYQLKDSHRCVDGAMHHNCPVCFEYLFDSTKAVSVLHCGHTIHLQCLYEMR
AHQQFSCPVCLRSACDMSDIWRKLDQEVAASPMPAICQKKMIWILCNDCGMTSNVQFHIL
AHKCPGCSSYNTRQTRGGPAACSRV
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggacaccggcccagtgcaatacgggtgcgtgcactacaagaggaaatgcaag
ataagggcgccgtgctgcggcgagatatttgattgcaggcactgtcacaatgaagccaag
gattcactggaggtcaataaccacgaacgccacgtggttcctcgccacgagatcaagctg
gttatctgctctctctgcaataaagaacaggatgtacatcaagattgttcaaattgtgga
gcatgttttggtaaatacttctgtgcaaaatgcaacttctttgatgacgatgtatcaaag
aaccaatttcactgtgatggatgtggcatatgtagaactggtggtgcagagaacttctat
cactgtgggaaatgcggatgttgctatacctatcagctgaaggattctcatcgttgcgtg
gacggagcaatgcatcataactgccctgtatgctttgagtatctattcgactcgacgaaa
gctgtcagcgtgctccattgtggacacacgattcatctgcaatgcctgtacgagatgaga
gcccatcagcagttctcgtgcccggtttgcttgaggtctgcttgcgacatgtctgacata
tggcgaaagcttgatcaagaggttgcagcctccccgatgccggcaatttgtcagaagaag
atgatatggatcctctgcaacgattgtggaatgacatcgaacgtgcagttccacattttg
gcgcacaagtgcccgggttgcagttcctacaacacccggcagacgaggggcggtccagct
gcatgctccagagtttga
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integrated database retrieval system
