Setaria viridis (green foxtail): 117840501
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Entry
117840501 CDS
T07951
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
KO
K16189
phytochrome-interacting factor 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117840501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117840501
Transcription factors [BR:
svs03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
117840501
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
117840501
NCBI-ProteinID:
XP_034576897
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Position
9:complement(3913419..3916127)
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AA seq
428 aa
AA seq
DB search
MDGNARPAANQRKPIVTDDDLVELLWHNGGVVAQPQAHQRPAPSERLDSSGLTDEETAAW
FPDTLDDSLEKDLYTQLWYSTIADAAPHHGGTLPGPSSQPPPPPPELAHPARPPVGSSGV
ESSWAGDICSTFCGSNQVPMTPAGINRGKDAALQSEVPRGAGAHDGAGAGTSSSGGSGSN
YGGSGLPSDSGRVQKKMGRCRDDSDSQSEDAECEATEETKSSRRCGTKRRTRAAEVHNLS
ERRRRDRINEKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMAPMMFP
GAHQFMPPMALGMTSACIPAAQGLNQMPRVVPYMNLPLPNHIPLNSSPAMNPMNSLSVSN
QMQNVHLREASNHFIHPDGRQTVVPQVPGTHVYGPEIPQAEHNRVLEVPASTVVPTSSAG
QPHTYGGV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggatggtaatgcgagaccggcggcgaatcagaggaagcccatcgtcacggacgacgac
ctcgtggagctcctgtggcacaacgggggcgtcgtcgcgcagccccaggcgcaccagcgg
ccggcgccctccgaacgcctggacagcagcggtctcaccgacgaggagaccgccgcgtgg
ttcccggacaccctcgacgactcgctggagaaggacctgtacacgcagctctggtacagc
accatcgccgacgccgccccgcatcacgggggcacgctcccgggccctagctcgcagccg
ccgccgccgccaccggagctggcgcacccggcaaggccgccggtggggagcagcggcgtc
gagtcgagctgggccggcgacatctgctcgaccttctgcggcagcaaccaggtgcccatg
acgccggcagggatcaacaggggaaaggacgcggcattgcagtcggaggtgccgcgcggt
gccggcgcgcacgacggcgccggcgccggcacatcgtcatccggcgggtccggaagcaac
tatggaggatccgggctgccgagtgacagcggccgtgtccagaaaaagatggggaggtgt
agagacgactcggatagtcagagtgaggatgccgagtgtgaggcaactgaggaaaccaaa
tcatcaaggcgatgcgggacgaagcgcaggactcgcgcagctgaagttcataatctctca
gagaggagaagaagagaccggatcaatgaaaagatgcgcgcgttgcaagagctgatacca
cactgcaacaagactgacaaagcgtcgatattagatgagacaattgagtatctgaagtcc
ctccaaatgcaagttcagatcatgtggatgacttctgggatggcaccgatgatgtttcct
ggtgctcaccaattcatgccaccaatggctctaggcatgacttcagcttgcatccctgca
gcgcaaggactaaatcagatgccaagagtagtaccatacatgaaccttcccctgccaaat
cacatccctctgaactcatctccagctatgaatccaatgaattcactgagtgtctcgaac
cagatgcaaaatgttcacctcagagaggcaagtaatcacttcattcacccagatggcagg
caaacagtggtacctcaggtaccaggaacccatgtttatggacctgaaataccacaagct
gaacataatagggtactggaagtgccagctagtactgtcgtgccaacctctagtgcagga
caaccgcatacttatggtggagtttag
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