Setaria viridis (green foxtail): 117841495
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Entry
117841495 CDS
T07951
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117841495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117841495
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117841495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA
AAA_28
SMC_N
NACHT
AAA_15
AAA_25
AAA_5
AAA_18
AAA_24
AAA_23
AAA_30
SRP54
AAA_22
Zeta_toxin
PduV-EutP
nSTAND_NTPase5
AAA_16
AAA_33
Arf
AAA_14
Rad17
Motif
Other DBs
NCBI-GeneID:
117841495
NCBI-ProteinID:
XP_034577781
LinkDB
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Position
1:complement(40365753..40369298)
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AA seq
294 aa
AA seq
DB search
MTGEGNGDEGWRRSGIEVSALQFGYDGQSPLFARFNLRIAPGSRCLLVGANGSGKTTLLK
ILAGKHMVGGRDVVRVLNGSAFHDTQLVCNGELSYLGGSWSQTIGSAGDVPLQGDFSAEH
MIFGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVD
LDVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDIAYIQEGELRKSAKYSDIEE
LKSAENLLSVVESWLRSETKLPKKDPPRTETQPRRSSPFDSSPFRSSRHMAYYR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgaccggtgaagggaacggagacgaagggtggaggcggagcggcatcgaggtcagcgcc
ctgcagttcggctacgacgggcagtcgccgctcttcgcgcgattcaacctccgcatcgcc
cctggctcccgctgcctcctcgtcggcgcaaatggatcaggcaagactacactcttgaag
attcttgcgggaaagcatatggttggaggaagggatgtggttcgtgttctcaatggttca
gcttttcatgatacacagctggtgtgcaatggtgaactttcgtacttggggggctcttgg
agccagactattggttcagctggcgatgttccactacaaggcgatttctcagctgagcac
atgatttttggagttgatggggttgatcctgttaggcgagagaagctggttgatctgcta
gacattgatctgcaatggcgcatgcataaagtttcagatggacagcgccgcagggtgcaa
atctgcatgggtcttcttcatccatacaaggtgcttttacttgatgagatcaccgttgat
ctggatgttgtgaccagaatggatcttcttgacttctttaaggaagagtgtgaacagaga
gaagccaccattgtgtacgccacccatatattcgatgggctggagacatgggctaccgac
atcgcatacatccaggaaggcgaattgagaaaatcagcgaaatactcggacattgaagag
ctgaagagtgccgaaaacttgctgtcagtcgttgagtcatggctccgatcggagaccaaa
ctcccaaagaaggatcccccacgtacagagacccagcccaggcgctcctcgccgtttgat
agttctcctttccgctcatctcgccacatggcatactaccgctga
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