KEGG   Setaria viridis (green foxtail): 117857485
Entry
117857485         CDS       T07951                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117857485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:svs03021]
    117857485
Enzymes [BR:svs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     117857485
Transcription machinery [BR:svs03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     117857485
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 NrS1-1_pol-like_HBD
Other DBs
NCBI-GeneID: 117857485
NCBI-ProteinID: XP_034596054
LinkDB
Position
5:complement(42071263..42088681)
AA seq 1451 aa
MELNHELPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQS
ERDCDGHFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLRENIDLKTLERETVRATCKY
CSKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLE
GLPQDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPV
TPNCHRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVS
ECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPEN
LASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPL
QDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSI
RSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLS
VSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQ
NSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQG
VKLALDEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSDYIQSNLSVVRSSIMSFKD
VFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRIPSQLSC
VSWNRQKSLNCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFSEHADV
PGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCCNHDLVGELGAPVGSWA
ACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLE
YASLEVKNHLERVNFSDLVETIMIIYDGCDKTRKGGPWTTHFHISKEMMKKKRLGLGFVV
EELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIK
KRVIPSILDTLLKGFLEFKDVEIQCRHDGELLVKVGMSEHCKAGRFWATLQNACIPVMEL
IDWEQSQPKNVYDIFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQF
QALSSQGLNQQRSRLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFN
GTSGPFEIMHAGKPHEPEQNESIYDFLRSPEVRNFEKDHMDTCRQSTENALRCRLACKSK
DSATVQGGAMTIDQGFLHAKVGIWDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALK
FHPNGAQKIGVGVREIKIGLNPSHPGTRCFILLRKDDTTEDFSYNKCVQGAANSISPQLG
SYFEKKLHRRA
NT seq 4356 nt   +upstreamnt  +downstreamnt
atggagctgaatcatgaacttcctagagctattcttaatgcgataacatttgatctcatg
actagtacagatatggaaaagttgagcagcataagcataacagaagtgagtgatgtcact
agtcccaagttaggactaccaaatggttcgtcgcagtgtgagacttgtggatcacaaagt
gaacgtgactgtgatgggcattttggtgtgactaagctggcggcaacggtgcacaaccca
tactttatcgatgaagttgttcactttctaaatcaaatatgtcctggctgtctcaatcta
agggaaaacatagatttgaagacattggagagagaaacagttcgagcaacatgcaaatat
tgctcgaaggatggttctaaactttaccctagtgtaatctttaagacgctgtcaagtcca
agagtattattatccaagagtaaacttcacagaagcccaagcgtgatggaaaggatttca
attgttgcagaagctattgatagagggtctaataaatccaagggtaaaggttcgcttgaa
ggcctcccccaggattattgggattttgtaccttctgagaatcagcaattacagtccact
atgaccaagataatattatcaccctaccaagtctttcacatgttgaagaaaagtgaccct
gaacttatcaaacaatttgtttcaaggcgagagctattgtttctatcatgtttaccagtg
actcctaattgccatcgtgttgtagagattggatatgggctttcagatgggcggttaact
tttgatgacagaacaaaggcttacaagaggatggttgatgtcagtaagagaattgatgac
taccgccaacatccgcagttcagtgttcttgcaagttcacttgtctcaagccgagtttca
gaatgcctgaagtcatccaagttatactctaaaaagacagatgtggagacatccacagat
acatatggaatgaaatggctaaaggatgctgttctgagcaaaagatcagataatgctttt
cggagtattatggttggggacccaaaaattaggttatgggaaattggcattcctgaaaat
ttagcttcaaacttggttgtttctgagcacgttagttcttataatttagaaaatataaat
ttgaagtgcaacctgcaccttctagccaaggaagaactacttattcggcgaaatgggaag
ctaatgtttattcgaaaggcaaaccagctagaagttggtgacattgcctacagaccattg
caggatggtgatcttattctcatcaacaggcctccttcagtccatcaacactcactaatt
gcattatctacaaaaattctaccaattcagtctgtcgtatcaatcaatccactatgctgc
atgccttttttgggagactttgatggggattgtttgcatggatatatcccacaatctatt
cgatcaagaattgagcttggagagctggtaagcttacaccagcagctgttgaatatgcaa
gatggtcgaagtttggtgtcactaacacatgactctctagctgctgcacatttgttaaca
agtacagatgtttttctgaaggaatctgaattacagcagcttcaaatgctctgcctttcc
gtatcaacaacaccagtaccagcaataattaagtctatgaactttgaaggttctctgtgg
actggtaaacaatttttcagcatgcttcttccatcaggcatgaatttcagttgtgatagc
aagttgcacatcatagacagtgaagttcttacctgctcttcggggtcttcttggttacaa
aatagcacaaccggtctcttttctatcatgttcaaacagtatggtcgcaaggcacttgac
ttcctttcttctgcccaagaagtactatgtgagttcttaaccatgaggggtttaagtgtc
tctctttcagatctctatatgttctccgatcattactcgaggagaaaactgactcaggga
gtcaaactggctttggatgaagctgaagaagctttccgaatcaagcagatattgctagat
ccaattaacataccagttctaaagtgtcatgatgaaactgaagatgtaacttacagacaa
tctgattatattcagagcaatctatcagttgtcagatcttcaatcatgtcatttaaagat
gtcttcaatgatctcctaaaaatggtgcaacatcatgttagcaatgataactcaatgatg
gtgatgattaatgcaggaagcaagggtagcatgttgaaatatgtgcagcaaactgcatgt
gttggtcttcaacttccagcaagcaaatttcccttcagaattccttcccaactctcatgt
gttagctggaataggcagaaatcattaaattgtgaagctgagagtaccagtgagcatgtg
gaaggtcaaaacctttatgctgtaatcaggaattccttcattgagggtttaaatccattg
gagtgtcttctgcatgctatatctggcagggcaaacttcttcagtgagcatgctgatgtg
cctgggacactaacgagaaaattaatgtatcacttgagagatctacacgttgcttatgat
ggaaccgttagaagttcttacgggcagcacataatgcaattctcttatgatactgctgat
gatatgtgctgtaatcatgatctggtaggtgaacttggtgcccctgttggttcttgggcc
gcttgttccatttcagaagctgcatatggagctttggatcaccctgttaatggtttagag
gactcccctctcatgaatctacaagaagtatttaaatgtcacaaggctacaaattctggg
gatcatgttggtttgcttttcctgtcaaagcatttgaagaagtatagatacagtctggaa
tatgcatccctagaagttaaaaaccatctcgagcgagtaaacttctctgatttggttgaa
accatcatgattatatatgatggatgtgacaaaacaagaaaaggaggaccttggaccacc
cattttcatataagcaaggaaatgatgaagaaaaaaaggttaggattgggatttgttgta
gaagagcttacaaaagaatacgacgccaccagaaaccagctaaacaatgcaatcccatca
gttcatatttcaaagagaaaatgttcagtaggtgaccagtgtgttcaaaattcagcttgc
tgtatcacattggtagcacaagctgaatccaattccatgtctcagttggacactatcaag
aaaagagtgattccaagcatactggacacactgctgaaaggttttttggaatttaaggat
gttgagatccagtgtcgacatgatggtgaacttcttgtgaaagttggtatgtctgagcat
tgcaaggctgggaggttctgggctactctgcaaaatgcttgcattccagtaatggagttg
attgactgggagcagagtcaaccaaagaatgtatatgatattttctgttcatatggaata
gactcagcatggaaatgctttgttgaatctttaaaatcagtaacttctgatattggaagg
aatgttcgtcgggagcacttactaattgttgcagatagcctgtctgtaactgggcagttc
caggcgttaagcagtcaaggtttaaaccagcagcgctctcggttatcaatctcatcccca
ttttctgaagcatgtttttctaggcctgcacgaagttttataaatgctgcaaagcattgt
tcagtggacaatctgtgtggaagtctagatgcaattgcttggggcaaagagcctttcaat
gggacgtcagggccttttgaaattatgcatgcgggaaagccacatgaaccagaacaaaat
gagagcatctatgatttcttacgcagccctgaagttcggaattttgaaaaggatcatatg
gatacctgcagacaaagtactgaaaatgctttgagatgtaggttagcatgcaagtctaaa
gacagtgcgaccgtccaaggtggcgccatgactatcgaccagggctttcttcatgctaaa
gttggtatatgggataacattattgatatgcgcacttccttgcagaacatgctaagagag
tacccattaaatggatttgtgaaggagacagataaatcacaattagtcgaggccctgaaa
tttcatcccaatggagctcaaaaaatcggtgttggagtaagagaaatcaagatcggattg
aatcctagtcacccaggtacaagatgcttcattttactgcggaaagatgatacaactgaa
gacttttcttataacaagtgtgttcagggtgctgcaaactctatctcacctcaactcgga
agttattttgagaagaaactacatcgtagagcataa

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