Setaria viridis (green foxtail): 117864373
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Entry
117864373 CDS
T07951
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
117864373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117864373
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117864373
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
117864373
NCBI-ProteinID:
XP_034604340
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Position
7:complement(34311322..34316216)
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AA seq
820 aa
AA seq
DB search
MGIPSFYKWLVTRYPSIVSPAKEEPEEGIIFHNLYLDMNCIIHPCFHPQDQMHADVDVCP
PTTVSEVLESMFEHLDRLFRIIRPTRLLYLAVDGVVPCAKMNRVRRGRFHSAMLATSEAL
EEEKMRRELREQGKEVPPREISEVSDSNVITPGTEFMEKLSQALEYYTRYKLNTDPGWKD
IMVILSDANVPGEGEHKIMSFIRAQRSMEGYDPNTRHCLYGHDADLIMLALASHEVHFSI
LREDVLRPNQAETEGNSDKPYLFLNIWVLREYLEIELKILDPICEPDIERLIDDFIFICF
LMGNDFIPHIPSLETHEGAVHLLLEVYKTTFNKMGGYIVNTDKVKDKHGAYLEVSRLEIF
FHELSMYEEKIFLKRYELKQDLLHKVYREMLSEASESERSELRRKLDDRLFNEDRPYDRI
RLGLPGWKSRFHREYFGVETSNEIEKLQNDMAEKYLEGLCWVFQCYFAGVPSWSWYYPFY
VAPFVSDLKGLARFQISFTVDKPLRPFDQLMAVLPSPSWCALPKCYHWNFLYRREDDYPK
LQTDTKGKRFLWSGISEELLLSATEAVDEKLTMDEVRRNTTRQDKVFLHRNSNALAHLKE
VVVQTTYCSAQKLPIDLATSGIGGWLSPDDNDGLSNSFFPSPIKNLQDITNDQAISAMFF
NPEVGNPITRLLSDVRVPEKTVSGADISKRPLWHTYPGSRPPPPIVQRPDSIWKPSTPVT
PREEHKNAGTGWMGRGRGNNAIAAAQAKLARSSSYGHGTATDTPRSSSSSSYSYRKGFHR
VDMPHSRGSNSRFDNDGGGAPWTGGGGGGDHAASAQPRRW
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggggataccttctttctacaagtggctcgtgaccagatacccaagcatcgtctccccc
gcaaaggaggaaccagaggagggcatcatcttccacaacctctacctcgacatgaactgc
atcatccatccttgcttccacccgcaggaccagatgcacgcagacgtagacgtgtgccct
ccgacaacggtcagcgaggtgttggagtccatgttcgagcacttggaccgcctgttccgc
atcatcaggccgacaaggcttctctacttagccgtagatggcgttgttccatgcgccaaa
atgaatcgagtgcgacggggacgtttccactctgccatgctagccacaagtgaggcactt
gaagaggaaaaaatgcggagggaattaagagagcaaggtaaggaggtgccaccgcgagag
atttccgaggtttctgactccaatgtcatcacaccagggactgagttcatggagaagctg
tcacaagcgctcgagtactacacccgttacaaattgaatactgaccccgggtggaaagac
attatggtcatactctctgatgcaaatgtgcccggagaaggagagcacaagatcatgtct
ttcatccgtgcgcaacgcagcatggaaggctatgaccccaacactcgacactgcttgtat
gggcatgatgcagatttgataatgcttgctttggcatctcacgaggtccacttctctatt
ttgcgtgaggatgtgctacgcccaaatcaggcagaaaccgaagggaattcggataaacca
tatctgtttttgaacatatgggttctgagagagtacttggagattgagttgaagatattg
gacccaatttgcgagcctgatattgagaggctaatagatgacttcatctttatttgtttc
ttgatgggaaatgatttcatcccacatattccatcacttgagacgcatgagggtgcagtc
catcttcttttggaagtgtacaaaacaaccttcaacaaaatgggagggtatattgtcaac
acagataaagtgaaagataaacatggtgcatatctagaagtctcaaggttggaaatattt
tttcatgaactgtccatgtatgaagagaaaatttttctcaaaagatatgagctgaagcag
gatttgttgcataaggtatatcgcgaaatgttgagtgaagcttcagaaagtgaaagatca
gagctgaggcggaaactagatgaccgcctttttaatgaagaccgtccatatgatagaata
agactgggattaccgggatggaaatcccggttccacagggaatattttggtgtggaaact
tctaatgaaattgaaaagctgcagaatgacatggctgagaagtatttagaaggactttgc
tgggtgtttcaatgctattttgcaggcgtaccatcatggagctggtactatccattctac
gttgctcctttcgtatctgatctcaagggtcttgctcggtttcagatatctttcactgtg
gacaaaccactacgaccatttgatcagctcatggcagttttgccatcaccaagctggtgt
gctctcccaaaatgttaccactggaactttttgtatcgtcgagaagatgactatccgaag
ttgcagactgacacgaaggggaaacgtttcttgtggagtggtatctctgaggaactgctg
ctttctgccactgaagcggtagatgagaagctgacgatggatgaggtgagacggaatact
actcggcaagacaaggtctttctgcacaggaactcaaacgctctggcacatctcaaagaa
gttgttgtacagacaacatactgttcagcgcagaagcttccgatagatttagctacgagt
ggaatcggggggtggttgtcgcctgatgacaatgatggcttgagcaacagtttctttccc
tcgcccataaaaaatctgcaggacatcacaaatgatcaggcaatatcagccatgttcttc
aatcctgaggtagggaatccaattacaaggctacttagcgatgtcagagtacctgagaag
actgtttcgggagctgacatctcaaagaggccactctggcacacgtacccgggctcaagg
ccgccaccgcccatcgttcagaggccggattctatctggaagccgagcacgccggtgacg
ccgcgggaagagcacaagaacgccggaacggggtggatggggcggggcagagggaataat
gccattgccgccgcccaggcgaagctcgccaggagcagcagctacgggcatggcactgcc
accgacacgccacggagcagcagcagcagcagctacagctataggaaaggtttccatcgg
gtggacatgccgcatagcagaggaagcaacagcaggtttgacaacgatgggggaggtgca
ccgtggacagggggaggcggcggcggcgaccatgccgcgagtgcgcagccacgccgttgg
tag
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