Setaria viridis (green foxtail): 140222712
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Entry
140222712 CDS
T07951
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04075
Plant hormone signal transduction
svs04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
140222712
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
140222712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
140222712
Transcription factors [BR:
svs03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
140222712
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
140222712
NCBI-ProteinID:
XP_072149688
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Position
5:2409377..2412396
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AA seq
624 aa
AA seq
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MYVGCRSDGNEFAELLWENGQAVVHGRRKQTQTSFPPFTCAAASSSRAQEKQPGSDPVAL
FKTGGVFGAGGLVTSVHDFSSGLDATRDNGDLDDTVPWIHYPIIEEDSAAAPALAESYSP
DFFSELHAAAAAAAATNPSSLPPPIQHTTNNRSTPIATTSREPEPSKESHRMPVPGPATR
PEPPQAEFAATKQTRLGGGAEGLMNFSLFSRPAAMARASLQSAQRPPQTGTDKASNVTTS
TRVESTVLQSSIGPRTTPVFTDQRTAWSQPKEVRFSCTAAPTAGNLQQEMPRDRLGSMTL
QKQVKTRKEPEAAVATSSVCSGNGAGIGNDESWRQHKRKSQAECSASQDDDLEDESGGAR
RSGSRGTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL
QLQVQMMSMGSGLCIPPMLLPPTMQHLQIPQIAHFPHLGMGLGYGMGVFDMNSSPAVPFP
SMPGAHFPCSMIPGTTAQGLGMPGRNTVPMFGLPGQAIHPSASSVQPFPSLAGLPVRPNL
APQVSAAMANMVQEQHQDVATQQQQNMNSEARQGTNTGDPELQTILQVENRHFSVPSSAQ
TESGPFLDSGGNRTDTAGRNGAET
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgggatgcaggtccgacggcaacgagttcgccgagctgctatgggagaacggg
caggcagtggtgcacggccggaggaagcagacgcagacttcgttcccgcccttcacctgc
gctgctgccagcagcagccgggctcaagagaagcagccgggaagcgaccccgtggcgctg
ttcaagacgggaggtgtcttcggcgccggtggattggtaacatcggttcacgacttctct
tccggcctagacgccacccgtgacaacggtgatcttgatgacaccgtgccctggatccac
taccccatcatcgaggaagacagcgccgccgcacctgcccttgcagagagctacagtcca
gatttcttctcggagctccatgcagcggcagcggcggcagccgcgaccaaccccagctct
ctgccgccgcctatccagcacaccaccaacaacagaagcaccccgattgccaccaccagc
agagaaccagaaccctcgaaggaaagccaccgcatgccagttccaggtccagccaccagg
cccgaaccaccacaagccgagttcgcggccaccaagcagactcggctgggaggtggcgca
gagggcttgatgaacttctccctcttctctaggccggcagccatggcgcgagctagcctg
cagagcgcacagaggccaccacaaacaggcacagacaaggcgtccaatgtcaccacgagt
acccgcgtggagtccacggttctccagtcatccatcgggccaagaactactcctgtgttc
acggaccagaggacggcgtggtcacagcccaaggaggttcggttctcatgcacggcagcg
ccaaccgctggtaacctgcagcaagagatgccccgggacagacttggcagcatgactctg
cagaaacaggtcaagaccaggaaggagcctgaggccgcagtcgctacttcgtcagtctgc
tccggcaatggagctggaataggaaatgatgagtcctggcgccaacacaagaggaagagt
caagccgagtgttctgctagccaagatgatgatcttgaagatgagtccggtggtgccaga
agatctggcagcagaggcacgaagcgcagccgcaccgccgaggtgcacaatttgtcagaa
aggaggagaagagacaggatcaacgagaaaatgcgtgccctgcaagaactcatccccaac
tgcaacaagattgacaaagcctcaatgctagacgaagcgattgagtacctcaaaaccctt
cagcttcaagttcagatgatgtccatgggaagtgggctgtgcattcctccaatgctgctg
ccaccaaccatgcagcacttgcaaatcccccaaatagctcatttccctcatctcggcatg
ggattggggtatgggatgggtgtcttcgacatgaacagcagcccagcggttccctttccg
tccatgcctggtgctcacttcccttgctcaatgatcccaggcacgacagcacaaggtctt
gggatgcctggaagaaacacggtaccaatgtttggacttcccggacaagcaatacatcca
tcagcatctagtgtacagccattcccatctttggctggccttcctgttaggccaaacctg
gcccctcaagtctcagcggccatggctaacatggtgcaggagcaacatcaagacgtagca
actcaacagcagcagaatatgaatagtgaagctcgacagggaacaaatacaggagatcca
gaattacagaccatcctgcaggttgagaaccggcattttagtgtaccctcttcagcacaa
acagaaagtggtccgtttctggatagtggcggcaacaggactgatactgcagggagaaat
ggggctgaaacataa
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