Rhizorhabdus wittichii RW1: Swit_3952
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Entry
Swit_3952 CDS
T00538
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi00300
Lysine biosynthesis
swi00550
Peptidoglycan biosynthesis
swi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Swit_3952
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Swit_3952
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
swi01011
]
Swit_3952
Enzymes [BR:
swi01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Swit_3952
Peptidoglycan biosynthesis and degradation proteins [BR:
swi01011
]
Precursor biosynthesis
Amino acid ligase
Swit_3952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
ABQ70297
UniProt:
A0A9J9HEZ3
LinkDB
All DBs
Position
complement(4339306..4340769)
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AA seq
487 aa
AA seq
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MRLTDLLAGFPATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFIAQAVADG
AAAIVSAPGVAVGSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAVTGTNGKTSTVE
LTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRKEGVTHAAFEAS
SHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVDQDGAAVVWADD
PRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKAREVKLPLIGAY
QAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIYVDYAHTPDGLE
AAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDNPRSEDPAAIRR
DVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGDQMRVLPFDDVT
VARECAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcgattgactgacctcctggccgggtttccggccacgaccggcgcggacgccggcgac
gcgcggatcaccggcttcgcgatcgaccatcgcaaggtcgcgccgggcacggtgttcggc
gccttcaggggcagccgcttcaacggcgaggacttcatcgcccaggccgtcgccgacggc
gcggcggcgatcgtctccgcgcccggcgtcgccgtgggcagcgcaatcgggggcgcggtc
cacatcgtcgacgacgagccgcgccggctgttcgcccggcttgccgcgcgcttcttcgcg
cccttccccgacaccacggtcgccgtcaccggcaccaacggcaagacctcgacggtcgag
ctgacccgccagctgtggcggatggcgggcttccacgccgcctcgatcggcacgctcggc
gtcaccaccgccgacgagcaggtgtcgaccgggctgaccacccccgacatcgtcaccttc
ctgtcgaacatggcggggctccgcaaggaaggcgtcacccacgccgccttcgaggcgtcg
agccacggcctgtcgcaatatcggaccgaggggctgccggtgcgcgcggcggccttcacc
aatctgagccgcgaccatctcgactatcacggcacgatggaggcctatttcgcggccaag
ctgcgcctgttcaccgaggtggtggaccaggacggcgcggccgtggtctgggccgacgat
ccgcgatcggtcgaggtgatcgcggcggtgcgggcgcgcggcgtccgcctgctcagcgtc
ggcgcggccggggagacgatccgcctggtcgagcgcacgccgaccgcgctcggccagacg
ctcaagctcgagatcgagggcaaggcgcgcgaggtgaagctgccgctgatcggcgcctac
caggccgccaacgcgctggtcgcggccgggctggtcgtcgccaccggcggcgagatcggc
ctgaccctcgccaatctccagcgggtcgcgccggtgcgcggccggctcgaacgcgccgcg
atcagccgaaccggcgcgccgatctatgtcgattatgcgcatacgcccgacgggctggag
gccgcgatcgaggcgctgcgcccgcacaccgaggcccggctgatcaccgtgttcggcgcc
ggcggcgaccgcgacaccggcaagcggccgctgatgggcgaggtatcggcccggctgtcc
gaccgcaccatcgtcaccgacgacaatccgcgcagcgaagaccccgccgcgatccgccgc
gacgtgatggccggggcaaccggcgcgatcgagatcggcggccggcgcgaggcgatcgcc
gccgccatcgccgaagcgcaggccggcgacatcgtcctgatcgccggcaagggccatgaa
caggggcagatcgtcggcgccggcgaccagatgcgcgtcctgcccttcgacgacgtcacc
gtcgcgcgggaatgcgcggcatga
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