Rhizorhabdus wittichii RW1: Swit_4727 Help Entry Swit_4727         CDS       T00538                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism swi  Rhizorhabdus wittichii RW1 Pathway swi03030   DNA replication swi03410   Base excision repair swi03420   Nucleotide excision repair swi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:swi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Swit_4727    03410 Base excision repair     Swit_4727    03420 Nucleotide excision repair     Swit_4727    03430 Mismatch repair     Swit_4727  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:swi03032]     Swit_4727    03400 DNA repair and recombination proteins [BR:swi03400]     Swit_4727 Enzymes [BR:swi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Swit_4727 DNA replication proteins [BR:swi03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Swit_4727 DNA repair and recombination proteins [BR:swi03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Swit_4727    NER (nucleotide excision repair)     GGR (global genome repair) factors      Swit_4727    MMR (mismatch excision repair)     DNA ligase      Swit_4727   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Swit_4727 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT Nlig-Ia PTCB-BRCT 5_3_exonuc Zn_Ribbon_TF Motif Other DBs NCBI-ProteinID:  ABQ71064 UniProt:  A5VFJ8 LinkDB All DBs Position complement(5197020..5199146) Genome browser AA seq 708 aa AA seqDB search MTTESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRADS PSKLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEPK IDGLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEIR GEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAHG WGEVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDGV VYKVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPVT VGGVVVTNATLHNADEIGRLDVHPGDRVVVQRAGDVIPQIVENLSRDETRDPWPFPQTCP ECGSAAEREPGEVDYRCTGGLICPAQRVERLRHFVSRHALDIEGLGLTHIESFFRDGLVQ SPADIFRLTKDILLTRERWAEVSAGNLIAAIDAKRHPPLDRFLFALGIRHVGEVTARDLA RRYRSWEGLKAMIDRTIEARDAAVQAIGETDEKFAARTAKELAAIVETPGVGPEVALALV DFFAEPHNADAVADLLSQLQPADVIHETRASEVSGKTVVFTGTLETMSRDEAKAQAEALG AKVAGSVSAKTDLVVAGPGAGSKLKKASDLGIAVTDEAGWAKIVADAQ NT seq 2127 nt NT seq  +upstreamnt  +downstreamnt atgacgaccgaatcccaggccgccgagcggctcgccttcctcgccgccgagatcgcccgg cacaatgcgctctaccatggcgaggacgcgcccgagatcagcgacgccgactatgacgcg ctgatgcgcgagaacgccgcgctggaagccgagtatccgcatctggtgcgcgccgattcg ccgtcgaagctggtcggcgccgccccgtcggggcatctcgccaaggtcgcgcatgcgcaa ccgatgctcagcctcgacaacgccttcgccgatgaggacgtggtcgacttcgtcggccgg gtgcgccgctatctgagcctcggcgccgaggagccggtggcgctgaccgccgagcccaag atcgacggcctgtcctgctcgctgcgctacgagaagggcgtgctggtgctcgccgcgacg cgcggcgacggcacgaccggcgaggacgtcaccgccaacgtccgcaccatcgacgacatc cccgagcggctgcgcggcggcgacctgctgtcgagcccgcccgatgtgttcgagattcgc ggcgaggtctacatggccaaggccgacttcgccgcgctcaacgcccgcctgctggcggag gccgaggacccggccaaggcgcgccagttcgccaatccgcgcaacgccgccgccggatcg ctgcgccagaaggacccgggcgtcaccgcctcgcgccccctgcgcttcctggcgcatggc tggggcgaggtatcggcgctacccgccgacacccagaagggcgtgatggacgcgatcgcc gcctggggcctgccggtgtccgacgatttcgtccgggtcgacggcgccgcgcaggcgctg tcgcattaccgcgcgatcgaggcgaagcgcgccgacctgccgttcgacatcgacggggtc gtctacaaggtcgaccggctcgactggcagaaaaggctgggcttcgtcgcgcgcgcgccg cgctgggcgatcgcgcacaaattcccggccgaaaaggcccagaccctgctcaaggacatc gacatacaggtcggccgcaccggcaagctgaccccggtcgcgcggctcgagccggtcacg gtcggcggcgtcgtcgtcaccaacgccacgctccacaatgccgacgagatcggccggctc gacgtgcaccctggcgaccgggtggtggtgcagcgcgcgggcgacgtcatcccgcagatc gtcgagaatctgtcgcgcgacgagacgcgcgatccctggcccttcccacagacctgcccc gaatgcggatcggcggccgagcgcgagccgggcgaggtcgactatcgctgcaccggcggc ctgatctgcccggcgcagcgggtcgagcggctgcgccatttcgtgtcgcgccacgcgctc gacatcgaggggctcggcctcacccatatcgagagcttcttccgcgacgggctggtccag tcgccggccgacatcttccggctgaccaaggacatattgctgacccgcgagcgctgggcc gaggtctcggcgggcaacctgatcgcggcgatcgacgccaagcgccatccgccgctcgac cgcttcctgttcgcgctcggcatccgccatgtcggcgaggtgacggcgcgcgacctcgcc cgccgctaccggagctgggagggcctcaaggcgatgatcgaccggacgatcgaggcgcgc gacgccgccgtccaggcgatcggcgagaccgacgagaaattcgccgcccgcaccgccaag gagctcgccgcgatcgtcgagacgcccggcgtcggaccggaggtcgcgctggcgctggtc gacttcttcgccgagccgcacaatgccgatgcggtcgccgacctgctgagccagctccag cccgccgacgtgatccacgaaacgcgcgcgtcggaggtcagcggcaagacggtggtgttc accggcacgctggagacgatgtcgcgcgacgaggccaaggcgcaggccgaggcgctcggc gccaaggtggcgggatcggtgtcggccaagaccgacctggtggtcgcgggccccggcgcg ggatcgaagctcaagaaggcgagcgacctgggcatcgccgtcaccgacgaggccggctgg gcgaagatcgtcgccgacgcgcaatga

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