KEGG   Rhizorhabdus wittichii RW1: Swit_5000
Entry
Swit_5000         CDS       T00538                                 
Name
(GenBank) TRAG family protein
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
swi  Rhizorhabdus wittichii RW1
Pathway
swi03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:swi00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Swit_5000
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:swi02044]
    Swit_5000
Enzymes [BR:swi01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     Swit_5000
Secretion system [BR:swi02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   Swit_5000
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind
Other DBs
NCBI-ProteinID: ABQ71616
UniProt: A0A9J9LHC1
LinkDB
Position
pSWIT02:complement(116346..118358)
AA seq 670 aa
MTRLSDARPLTRVVIVAGVLAATFLACALCAVLVALVGLNQIGPRMQISAIPAWLWYYRG
DPLLHLWLKRGALISGAIAFVILLIILKRGRTLHGEARFARESEIRREHLRSNSGIIVGQ
KGGRYLVFGGTEHVLLEAPTRAGKGVGVVIPNLLSWADSVVVLDVKRENWDITAGFRARH
GQAVYLFDPLDPEGRSARYNPLSFIDRLDDTDVINELQKIGGMLFPAPEKADPFWAEAAR
AAFVGVGALVAANPALPFTIGEIYRRLTAGDPKVELPKVVEEAQQRGQRLSQACVSALSD
FTSASDNTFSGIKQTITSKLNLWLNPYVDAATSETDFDLRQVRRERISIYLGVSPDNIDR
IAPVYNLFLQQLIDLNTRELPENGGRVPVLILLDEFARLGKAPVIASAFSYVAGYGLRLL
PVIQSRSQPRGIYGVDVTDEIIANCGLEIVFTPKELKVASELSERLGYFTMNVKSKSRTI
HGLLANRSISESDQRRALMMPQELMQMPKGELLLMRGGIPPVRGRKIEYFRSKRFTSRIS
DPPKVAPRPIAINAMSSATKLAGEASSSDPLAQALSAKKAALLSDDQATAPTERAEPVMR
ALTGNELSGFAEITDDMLVLGDMVDLPPPGDEQAAIAFVTAMTARAVLEPVGGGAQSPAF
VTERHDHDRE
NT seq 2013 nt   +upstreamnt  +downstreamnt
ttgacccgcctgtcggacgcacgaccgctcactagggtcgtaatcgtcgcgggggttctc
gcggcaacctttttggcatgcgccctgtgcgcggtgctggtcgcactggtcggcctgaac
cagatcggcccgcgaatgcagatctcggcgatacccgcatggctctggtattatcgcggc
gatccgctgcttcatctgtggctgaagcgaggcgcgctgatcagcggcgcgatcgctttc
gtcatcctgctcatcatcctgaagcgagggcgcacgctccacggcgaagccaggttcgcg
cgtgaaagtgaaatccgccgcgaacatctgcgcagcaacagcgggatcatcgtcggacag
aaaggcggccgctatctcgttttcggcggcaccgaacatgtcttgctcgaggcgccgacg
cgcgccggcaagggcgtcggcgttgtgatccccaatctcctgagctgggcagactcggtg
gtggtgctcgacgtgaagcgcgagaattgggacatcaccgctggttttcgcgcgcggcat
ggccaggcggtctatctgttcgatccgctggatcctgaagggcgaagcgcccgctacaat
cccttgagtttcatcgaccggctcgacgacaccgatgtgatcaatgaactccagaagatc
ggcggcatgctgtttccggccccggaaaaggctgatccgttctgggcggaagcggcgcgc
gccgcctttgtcggcgtcggcgcccttgtcgcagccaaccccgccctccccttcacgatc
ggcgaaatctatcggcggctgacagcgggcgatccgaaggtcgaactccccaaggtcgtc
gaggaggcgcagcagcgcgggcagcggctgagccaggcgtgtgtgtcggcgctgagcgac
ttcacctccgcgtccgacaacaccttctccggcatcaaacagacgatcacctcgaagctc
aatctgtggctcaacccctatgtcgatgctgcgacatcggagacagattttgatctgcgg
caggtccggcgcgagcggatatcgatctatcttggggtgtcgcccgacaatatcgaccgg
atcgcgcccgtctataacctcttcctccagcagctgatcgatctcaatacgcgggaactg
cccgagaatggcggccgcgtgccggtgctcattttgctcgacgagttcgcccgcctcggc
aaggcgccggtcatcgcctcggccttttcttatgtcgcaggctacgggcttcgcctgttg
ccagtcatacagagccgttcccagccccgcgggatctatggcgtggacgtcaccgacgag
atcatcgccaattgcggcctggagatcgtatttacacccaaggagctgaaggtcgccagc
gaactctccgagcggcttggctatttcacgatgaacgtcaaatcgaagagccgcacgatt
catggcctgctcgccaatcgcagcatctcggaatcagaccagcgccgtgcgctgatgatg
ccgcaggaactgatgcagatgcccaagggcgagcttctgctcatgcgcggaggcattcca
cccgtcaggggccgcaagatcgagtatttccgctcgaaacgcttcacgagccggatcagt
gacccacccaaggtcgcgccccgtccgatcgcgatcaacgccatgtcgtcggccaccaaa
ttggcaggcgaggcgagcagcagtgatcctttggcgcaggcccttagcgcgaagaaggcc
gccttgttgagcgacgatcaggcgaccgcgccgacagaacgggcggaacctgtcatgcgc
gcgctcaccggtaacgaactctcgggctttgccgaaatcaccgatgacatgttggtgctg
ggcgacatggtggatctaccaccgcccggtgacgaacaggcagctatcgcctttgtcacg
gcgatgacggcccgggccgttctcgagcccgtgggtggaggcgcccaatctccagcattt
gtgaccgaaaggcatgaccatgacagagaatga

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