Syntrophomonas wolfei: Swol_0369
Help
Entry
Swol_0369 CDS
T00396
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
swo
Syntrophomonas wolfei
Pathway
swo03030
DNA replication
swo03410
Base excision repair
swo03420
Nucleotide excision repair
swo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
swo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Swol_0369
03410 Base excision repair
Swol_0369
03420 Nucleotide excision repair
Swol_0369
03430 Mismatch repair
Swol_0369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swo03032
]
Swol_0369
03400 DNA repair and recombination proteins [BR:
swo03400
]
Swol_0369
Enzymes [BR:
swo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Swol_0369
DNA replication proteins [BR:
swo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Swol_0369
DNA repair and recombination proteins [BR:
swo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Swol_0369
NER (nucleotide excision repair)
GGR (global genome repair) factors
Swol_0369
MMR (mismatch excision repair)
DNA ligase
Swol_0369
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Swol_0369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
RNA_ligase
HHH
Cdd1
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ABI67709
UniProt:
Q0AZZ5
LinkDB
All DBs
Position
441936..443921
Genome browser
AA seq
661 aa
AA seq
DB search
MEVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPTQR
VAGKASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVARTLSYMAELKIDGVSIALV
YENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLRHSLPRLEVRGEVFMPKQEFIRLNE
EKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDIIYMEGQTLAEQQEAWHFMQ
ELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREELGATARSP
RWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMHNFDLIKEK
DLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENCPACDSKVARFAGEVAYRCE
NINCPARLKESLIFFASRGAMDIDGLGSAVIEQLVNKDMVKRIDDLYRLREEEITALERM
GPKSAANLIKAINESKSRPLSRLLTALGIRHIGARSAKILSRHIHDIDDFYKLGVENLTS
IPEIGPKMAESMVNFFAEPRNRETIEDLKDLGVNTREEAIEAGEQLLQGKTFVLTGTLPS
LTRQQASEMIESRGGKVSSSVSKKTSYVVAGDDPGSKLDKALQLELTILDEAGFLNLLGL
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcagttcccggataaaggagctcagggaagagatgcaaaagcatgattaccac
tattacattttagatgccccgctaataagtgactccggctatgatcgcctgatgcaggaa
ctgaaaaagctggaggaggaatacccgcagtatataaccgccgattcacctacgcagcgg
gtagcgggcaaggcttcggaaaagttctccccggtaaggcaccgctttcccctcttaagc
ctggacaatgccttttcctatcaggatttattggagtttgaccgccggataggtcgggtc
gcccggacgctgtcatatatggcagaacttaaaatagatggggtttctatcgcattggtt
tatgaaaacggggttttgctgaatgctgctaccagaggggatggtctggtgggagaggat
gtaacagccaacatcaggacaataaagactatcccgcttcgcttgcgccattccctgccc
cggctggaagtgcgcggcgaagtgtttatgcccaaacaggaatttattcgactcaatgag
gaaaaagaagaaaaaggggaaagggtttttgccaatccccgcaatgccgctgctggttca
ttgcggcagctcgatccccgggtaactgccggacgggctctgtctgctttcgtttatgac
attatttatatggaaggacaaactctagcggaacagcaagaggcctggcattttatgcag
gaactgggcttgccggtcaatccggaggtacgcttctgcgcggatataaatgctgttctg
gcttttactgaggaatatgctgaaaagcgacatgagcttccctatgagattgacggggtg
gtggtcaagctcaataccctggcagaacgggaggagttgggggcaaccgctaggagtccc
cgttgggcgatggcctacaaattccccgccgaagaaaaggaaacccggctcctgggcgta
gaaataaatgtggggcgaaccggaatcatagctcccactgctttgctggaaccggtattt
ttggctggaactacagttagccgggccagtatgcacaactttgatctgatcaaggaaaag
gatctgcgcatcggcgatatggttttactgcataaggcgggagatataattcccgaaatc
atcgcttccctccccgaaaaaagaagcggggaggagcgggtgataacgcctccggaaaac
tgtcccgcttgtgatagcaaggtggcgcgttttgccggagaagtggcttatcgttgcgaa
aacatcaattgcccggcccggctcaaggaaagccttatcttttttgcctcccgcggggcc
atggatatagatggattaggttcagctgtaatcgaacagttggtaaacaaagatatggta
aaacgaattgacgacttgtatcgcttacgggaagaggagatcactgctttggaaagaatg
gggccaaaatccgccgccaatttaatcaaagccattaatgagagcaaatcccgtcccctc
tcccgcctgcttaccgccctgggaataaggcatataggagccaggagcgctaaaattctg
agccgccatattcatgatatagatgatttttataagttaggggtagagaatctaaccagc
attccggaaatcggacccaagatggccgagtctatggttaatttctttgctgagccccgg
aaccgggagaccatagaagatctgaaagacctgggggttaatacccgggaggaggccatc
gaggccggagagcaactgctgcaggggaagacctttgtgcttaccggcaccctgcccagc
ctgacccgccagcaggccagcgagatgattgaaagccggggaggaaaagtgagcagtagt
gtcagtaagaaaacctcctatgtcgtggctggcgatgatccgggcagcaagctggacaaa
gcactgcaactggaattgaccatactggacgaagcaggttttttaaacctcttgggatta
tcttag
DBGET
integrated database retrieval system
