Shewanella xiamenensis: MKD32_07905
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Entry
MKD32_07905 CDS
T08228
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03030
DNA replication
sxm03410
Base excision repair
sxm03420
Nucleotide excision repair
sxm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKD32_07905 (ligA)
03410 Base excision repair
MKD32_07905 (ligA)
03420 Nucleotide excision repair
MKD32_07905 (ligA)
03430 Mismatch repair
MKD32_07905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sxm03032
]
MKD32_07905 (ligA)
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_07905 (ligA)
Enzymes [BR:
sxm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MKD32_07905 (ligA)
DNA replication proteins [BR:
sxm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKD32_07905 (ligA)
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MKD32_07905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKD32_07905 (ligA)
MMR (mismatch excision repair)
DNA ligase
MKD32_07905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKD32_07905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UML95207
LinkDB
All DBs
Position
1788488..1790557
Genome browser
AA seq
689 aa
AA seq
DB search
MQDIQLDKRLSELLSQAGTSENAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQQ
LKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR
VGQVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNY
PELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYA
YALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSDLPF
EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVAR
LKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAI
TFPQHCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQL
IDKELVQSPADLFKLTASMMTMLDRMGMKSATNLALAIEAAKTTTLPRFLYALGIREVGE
ATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVN
WPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEA
AGSKLAKAQELGVKVIGEDELLALLAANT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgataaacgcctatctgaactgctttcacaagctggtacgtcg
gaaaatgcgcagccattgatgcaggcgctctgccaatctctgaatgaacacaatattcgt
tactatgtcgatgatgcgccaagcattactgactcagaatacgacaggttaatgcagcag
ttgaaacagcttgaggccgagtatcctcagtttgttgctgccgactcgcccacccaaaga
gtgggcggtatggcgctggcaaagtttgaacaaattactcatcttaaacccatgttaagt
cttgataatgccttcgatgaggcggactttagcgcatttcataagcgtgttagcgacaga
gttggccaagtgagtttttgctgtgagcctaagctcgatggtctagcggtgagtattttg
tatcgcaatggggtgcttgagcgcgccgcgacccggggcgatggcactgtgggcgaagat
attaccgaaaacgttaaaaccattaagtcgattccgctcaaactgcgtggtgacaactat
cccgaattggttgaagtgcgcggcgaagcctttatgcccaaggcggcatttgaggcgcta
aatgagcgtgcacgcttaaaggatgaaaaactgtttgtgaatccgcgtaatgcggcagcg
ggcagcttacgtcagctcgacagtaaaattaccgcgtcacgggcgctgtctttttatgcc
tacgccttaggtgtggtggagccgacttcccacgagttagctaagacgcattacgagcaa
ttgcagcaacttaaatcttgggggctaccagtcagtagcgagattaaagtctgcgacgaa
ctcagccaagtgtttgcctactatcaagatatattgactcgccgcagcgatttacccttt
gaaatcgatggtgtggtaatgaaggtgaacgatatcgcccagcagcaaaccttagggttt
gtggccaaatctccccgctgggcaattgcctataaattccccgcgcaagaagaaatgacg
ctgctcgaaggcgtagattttcaagtgggccgcaccggcgcggtgactccggtcgcacgc
ctaaaacctgtgtttgtcggcggcgtgacggtttcgaacgcgactttgcacaatgccgat
gaaatcgagcgtttaggtgtgatggtgggcgataccgtgattatccgccgcgccggcgat
gtgatcccgcaaattgtggccatagtaccagagcgtcgccctgaagatgctaaggcgatt
accttcccgcaacattgccccgtttgcggcagtttggttgagcgattagaaggtgaggcc
gttgcccgttgtagcggtggcttattctgtgaggcgcagcgtaaagaggcgatcaaacat
tttgcctcccgtaaggcattagatatcgacggcatgggcgataaaatcgtcgagcagttg
attgataaggagttggttcaaagcccggcggacttatttaaactcaccgcctctatgatg
accatgctcgaccgaatgggaatgaagtcggccaccaatcttgcgctggcgattgaagcg
gctaaaaccacgactttgccacgtttcctctatgccttaggtattcgagaggtgggggag
gcgacggcggcgaaccttgcgacacactttggtagcctagaggcactgcgcgtagctacc
attgagcaactcattcaagttgaagatattggtgaagtggttgcccagcacgtggcgcat
ttctttgctcagccccataacctagaagtgatcgatgctttgattgcggctggtgtcaac
tggcctgcgattgcagcgccaagtgccgatgagcaaccattgaaggggcagacttgggtg
ttaacgggcaccttaaatcagcttaaccgtaacgatgctaaggcacagttacaggcttta
ggcgccaaagtggcgggcagtgtgtcgaaaaataccgattgcttagtggcgggtgaagcg
gcgggctccaagcttgccaaagcgcaggagctaggcgttaaggtgattggcgaagacgaa
ttgctcgcgctgctcgctgccaatacctaa
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