Streptomyces xanthii: IAG42_10350
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Entry
IAG42_10350 CDS
T07861
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sxn
Streptomyces xanthii
Pathway
sxn03030
DNA replication
sxn03410
Base excision repair
sxn03420
Nucleotide excision repair
sxn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IAG42_10350 (ligA)
03410 Base excision repair
IAG42_10350 (ligA)
03420 Nucleotide excision repair
IAG42_10350 (ligA)
03430 Mismatch repair
IAG42_10350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sxn03032
]
IAG42_10350 (ligA)
03400 DNA repair and recombination proteins [BR:
sxn03400
]
IAG42_10350 (ligA)
Enzymes [BR:
sxn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IAG42_10350 (ligA)
DNA replication proteins [BR:
sxn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IAG42_10350 (ligA)
DNA repair and recombination proteins [BR:
sxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IAG42_10350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IAG42_10350 (ligA)
MMR (mismatch excision repair)
DNA ligase
IAG42_10350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IAG42_10350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QNS08639
UniProt:
A0A7H1BIT4
LinkDB
All DBs
Position
complement(2299589..2301814)
Genome browser
AA seq
741 aa
AA seq
DB search
MGQDGEGERVDRVAGGGAVPAAAREEHARLAEQVEEHRFRYYVKDAPVVSDAEFDRLLRA
LEALEQEHPELRTPDSPTQKVAGDYATEFTSVEHRERMLSLDNAFDDAELAAWAERVARD
AGTTDYHLLCELKIDGLAVNLTYEDGRLTRAATRGDGRVGEDITPNVRTIAEIPDRLQGD
RIPALVEIRGEVFFPMEEFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHM
VVHGIGAREGFDIDRLSHAYELLREWGLPTTTHSRVVDDLDGVREYIAHYGENRHSVEHE
IDGVVVKLDEIPLQGRLGSTARAPRWAIAWKFPPEEVNTKLVNIRVGVGRTGRVTPYAQV
EPVTVAGSEVEFATLHNQEIVKKKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGTEHAFV
MPAECPACGTPLRPMKEGDIDLRCPNARTCPAQLRERLFYLAGRQCLDIENFGYVAAAAL
TGPLEPEQPPLTDEGDLFDLTMDQLLPIRAYVLDQDSGLPKRDPKTGEDKIADVFATKAG
EPKKNAVSMLEHIAAAKDRPLARIINGLSIRHVGPVAAAALAREFRSIDRIDQATEEELA
ATDGVGGIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGT
LQNYTRDVAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQVKVPVLDEDGFAVL
LEQGPEAAADVALPAEQPTEE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtggggcaggacggcgagggcgagcgggtcgaccgggtcgcgggcgggggcgccgtcccc
gccgcggcgcgggaggagcacgcccggctcgcggagcaggtcgaggagcaccgcttccgg
tactacgtgaaggacgcgcccgtcgtgtccgacgcggagttcgaccggctgctgcgcgcc
ctggaggcgctggagcaggagcaccccgagctgcgcacccccgactcgccgacccagaag
gtcgcgggggactacgcgacggagttcacgtccgtcgagcaccgcgagcgcatgctctcg
ctggacaacgcgttcgacgacgccgagctcgccgcgtgggccgagcgcgtcgccagggac
gccggcacgaccgactaccacctgctgtgcgagctgaagatcgacggcctcgcggtcaac
ctgacgtacgaggacggccggctgacccgcgccgccacccgcggcgacggccgcgtcggc
gaggacatcacgcccaacgtccgcacgatcgccgagatcccagaccgcctccagggggac
cgcatccccgccctcgtggagatccgcggcgaggtcttcttccccatggaggagttcgag
gggctcaacgcccgcctggtggaggctggcgacaagcccttcgccaatccacgcaacgcg
gcggcgggctccctgcggcagaaggacccccgcgtcaccgcctcccgtccgctgcacatg
gtcgtccacggcatcggcgcccgcgagggcttcgacatcgaccgcctctcgcacgcctac
gagctgctgcgcgagtggggcctgcccacgaccacgcacagcagggtcgtcgacgacctc
gacggcgtccgcgagtacatcgcgcactacggggagaaccgccactccgtggagcacgag
atcgacggcgtcgtcgtgaagctcgacgagatcccgctccagggccggctcggctccacc
gcccgcgccccacgctgggccatcgcctggaagttcccgcccgaagaggtcaacaccaag
ctggtcaacatccgggtcggtgtcggccgtaccggccgcgtcaccccgtacgcccaggtc
gagccggtcaccgtcgccggctccgaggtcgagttcgcgacgctgcacaaccaggagatc
gtcaagaagaagggggtgctcatcggcgacacggtcgtcatccgcaaggccggtgacgtg
atccccgagatcctcggcccggtcgtcgacctgcgcgacggcaccgagcacgccttcgtg
atgcccgccgagtgccccgcctgcggcaccccgctgcggcccatgaaggagggcgacatc
gacctccgctgtccgaacgcgcgcacctgcccggcccagctgcgcgagcgcctcttctac
ctcgcgggccgccagtgcctggacatcgagaacttcggctacgtggccgcggccgcgctc
accggacccctggagcccgagcagccgcccctgaccgacgagggcgacctcttcgacctc
accatggaccagctgctgcccatccgggcgtacgtcctcgaccaggacagcggactgccc
aagcgcgacccgaagaccggcgaggacaagatcgccgacgtgttcgccaccaaggcgggc
gagccgaagaagaacgcggtctcgatgctggagcacatcgccgccgccaaggaccgtccg
ctggcccggatcatcaacggcctgtcgatccgccacgtaggccccgtcgccgccgccgcg
ctcgcccgcgagttccgctccatcgaccgcatcgatcaggccacggaggaggaactcgcc
gcgaccgacggcgtgggcggcatcatcgccgcctccgtgaagcagtggttcgccgaggac
tggcaccgcgagatcctgcgcaagtggcgcgaggccggcgtccgcatggaggacgaaggc
gcaggtgaggacgaggggccgcgccccctggagggcctgaccgtcgtcgtcaccggcacc
ctgcagaactacacgcgcgacgtcgccaaggaggccctgcagagcagaggcgccaaggtg
accggctcggtgtccaagaagacgtcgttcgtggtcgtcggtgacaatccggggtccaag
tacgacaaggccatgcaggtgaaggtgccggtcctggacgaggacgggttcgccgtgctc
ctggagcagggcccggaagccgccgccgacgtggcacttccggccgaacaaccgaccgag
gagtag
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