Streptomyces xanthophaeus: KPP03845_105225
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Entry
KPP03845_105225 CDS
T08962
Symbol
ligA_1
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sxt
Streptomyces xanthophaeus
Pathway
sxt03030
DNA replication
sxt03410
Base excision repair
sxt03420
Nucleotide excision repair
sxt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPP03845_105225 (ligA_1)
03410 Base excision repair
KPP03845_105225 (ligA_1)
03420 Nucleotide excision repair
KPP03845_105225 (ligA_1)
03430 Mismatch repair
KPP03845_105225 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sxt03032
]
KPP03845_105225 (ligA_1)
03400 DNA repair and recombination proteins [BR:
sxt03400
]
KPP03845_105225 (ligA_1)
Enzymes [BR:
sxt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPP03845_105225 (ligA_1)
DNA replication proteins [BR:
sxt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPP03845_105225 (ligA_1)
DNA repair and recombination proteins [BR:
sxt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPP03845_105225 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPP03845_105225 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
KPP03845_105225 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPP03845_105225 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_lig_T4_1
HHH
Zn_ribbon_TFIIB
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
WCD88815
LinkDB
All DBs
Position
5665923..5668124
Genome browser
AA seq
733 aa
AA seq
DB search
MAAEQQDTAVPAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDTLLRSLEALEEQYP
ELRTPDSPTQKVAGAYETDFTSVEHRERMLSLDNAFDDEELAAWAERVARDVNTSDYHYL
CELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIADIPDRLKGDRIPALVEIR
GEVFFPMEKFEELNARLVEAEGKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGARE
GFEIERQSQAYELLHEWGLPTAQHNKVVSTLAEVREFIAYFGENRHSVEHEIDGVVVKLD
EISLQGRLGSTARAPRWAIAWKYAPEEVNSKLIDIKVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAACPECG
TELRPMKEGDIDVRCPNAQTCPAQLRERLFYLGGRQSLDIENFGMVAAAALTAPLEPAEA
PLLDEGDLFGLTIEQLLPIKAYVLDADSGLPKRDPKTGEEKIVTVFANQKGEPKKNALAM
LENIAAAKDRPLARIINGLSIRHVGPVAAEALAREFRSIERIEQATEEELTATDGVGAII
AASLKEWFAVDWHQEILRKWREAGVRMEEEGSAEEQGPRPLEGLTVVVTGTLQSHTRDGA
KEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKLSILDDAGFAVLLEQGPDAAR
EAALPVDGGGAAE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaacagcaggacacggcagtaccggcggcggtgcgtgagcagcacgcgctc
ctggccgagcaggtcgaggagcaccgcttccggtactacgtgaacgaccagccggtcgtc
agcgacgccgagttcgacacgctgctgcgctcgctggaggcgctggaggagcagtacccg
gagctgcgcacgcccgactcgcccacccagaaggtggccggggcgtacgagacggacttc
acctccgtcgagcaccgggagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctggccgcctgggccgagcgggtggcccgcgacgtcaacacctcggactaccactacctg
tgcgagctcaaggtcgacggcctcgccgtgaacctcacctacgagaacggccgcctcacc
cgcgccgccacccgcggcgacggccgtaccggcgaggacatcacgcccaacgtccgcacc
atcgccgacatcccggaccgcctcaagggcgaccggatcccggcactggtcgagatccgc
ggcgaggtcttcttcccgatggagaagttcgaggagctcaacgcccgcctggtcgaggcg
gagggcaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgccagaaggac
cccaaggtcaccgcgagccgcccgctgcacatggtcgtgcacggcatcggcgcccgcgag
ggcttcgagatcgagcgccagtcgcaggcgtacgagctgctgcacgagtggggtctgccg
accgcgcagcacaacaaggtggtctccacgctcgccgaggtccgggagttcatcgcctac
ttcggcgagaaccggcactcggtggagcacgagatcgacggggtcgtcgtcaagctcgac
gagatctccctccagggccggctcggctccacggcgcgcgccccgcgctgggccatcgcc
tggaagtacgcgcccgaagaggtcaacagcaagctgatcgacatcaaggtcggcgtcggc
cgcaccggccgggtgaccccgtacgcgcaggtggagccggtgaccgtggcgggctccgag
gtggagttcgcgaccctgcacaaccaggaggtcgtcaaggccaagggcgtgctcatcggg
gacacggtggtgctgcgcaaggcgggcgacgtcatccccgagatcctcgggccggtggtg
gacctgcgcgacggcagcgagcgggagttcgtcatgccggccgcctgccccgagtgcggg
acggagctgcggccgatgaaggagggggacatcgacgtccggtgccccaacgcccagacc
tgcccggcccagctccgggagcggctgttctacctcggcggccggcagtccctggacatc
gagaacttcggcatggtggcggccgccgcgctgaccgcgccgctggagcccgccgaggcc
ccgctgctggacgagggtgacctcttcggcctgaccatcgagcagctgctgcccatcaag
gcgtacgtcctcgacgcggacagcggactgcccaaacgggacccgaagaccggcgaggag
aagatcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacgccctggcgatg
ctggagaacatcgcggccgccaaggaccgcccgctggcccggatcatcaacggcctgtcg
atccgtcacgtcggcccggtcgccgcggaggccctcgcccgcgagttccgttcgatcgag
cgcatcgagcaggccaccgaggaggaactgacggcgaccgacggggtcggcgcgatcatc
gcggcctccctcaaggagtggttcgccgtcgactggcaccaggagatcctgcgcaagtgg
cgggaggcgggcgtccggatggaggaggaaggttccgccgaggagcaggggccgcggccg
ctggaggggctgaccgtggtcgtcaccggcaccctgcagagccacacccgggacggggcc
aaggaggcgctgcagagccgcggggccaaggtcaccggctccgtgtcgaagaagacctcg
ttcgtcgtggtgggcgacaacccggggtcgaagtacgacaaggccgtgcagctgaagctc
tcgatcctcgacgacgccggtttcgccgtgctgctggagcagggaccggacgcggcgcgg
gaagccgccctccccgtggacggcggcggcgcggcggagtaa
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