Streptomyces yangpuensis: NRK68_24070
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Entry
NRK68_24070 CDS
T08585
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syan
Streptomyces yangpuensis
Pathway
syan03030
DNA replication
syan03410
Base excision repair
syan03420
Nucleotide excision repair
syan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NRK68_24070 (ligA)
03410 Base excision repair
NRK68_24070 (ligA)
03420 Nucleotide excision repair
NRK68_24070 (ligA)
03430 Mismatch repair
NRK68_24070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syan03032
]
NRK68_24070 (ligA)
03400 DNA repair and recombination proteins [BR:
syan03400
]
NRK68_24070 (ligA)
Enzymes [BR:
syan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NRK68_24070 (ligA)
DNA replication proteins [BR:
syan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NRK68_24070 (ligA)
DNA repair and recombination proteins [BR:
syan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NRK68_24070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NRK68_24070 (ligA)
MMR (mismatch excision repair)
DNA ligase
NRK68_24070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NRK68_24070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
RNA_lig_T4_1
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UUY50033
LinkDB
All DBs
Position
5221443..5223644
Genome browser
AA seq
733 aa
AA seq
DB search
MAAEQQDTAVPAAVREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDRLLRSLEALEEQYP
ELRTPDSPTQKVAGAYETDFASVEHRERMLSLDNAFDDEELSAWAERVARDTGTSAYHYL
CELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLSGDRIPALVEIR
GEVYFPMEKFEELNARLVEAEGKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGARE
GFEIERQSQAYELLREWGLPTARHNKVVSSLAEVREFITEFGANRHSVEHEIDGVVVKLD
EIALQGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFEMPAECPACG
TALRPMKEGDIDVRCPNGQTCPAQLRERIYYLAGRQALDIENFGIVAAAALTGPLEPAEP
PLLDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKIVTVFANQKGEPKKNALAM
LENIAAAKERPLARIINGLSIRHVGPVAAEALAREFRSIAAIEAATEEQLTATDGVGAII
AASLKEWFAVDWHQEILRKWREAGVRMEEEGSAEQEGPRPLEGLTVVVTGTLQNHTRDGA
KEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKLPVLDDAGFAVLLEQGPDAAR
EAALPVDGAAEGE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaacagcaggacacggcagtaccggcggcggtgcgcgaacagcaccagctg
ctggccgaacaggtcgaggagcaccgcttccggtactacgtgaacgaccagccggtcgtc
agcgacgccgagttcgaccggctgctgcgttcgctggaggcgctggaggagcagtacccg
gagctgcgcacgcccgactcgcccacccagaaggtggccggggcgtacgagacggacttc
gcctccgtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctgtccgcctgggccgagcgggtggcccgggacacgggcacctccgcctaccactacctg
tgcgagctgaaggtggacggcctcgccgtcaacctcacctacgagaacggccgcctcacc
cgggcggccacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtccgcacc
atcgccgagatcccggaccggctctcgggcgaccggatcccggcgctggtggagatccgc
ggcgaggtctacttcccgatggagaagttcgaggaactcaacgcgagactcgtcgaggcc
gagggcaagcccttcgccaacccgcgcaacgccgcggccggatcgctgcgccagaaggac
ccgaaggtcaccgcgagccgcccgctgcacatggtcgtccacggcatcggcgcccgcgag
ggcttcgagatcgagcgccagtcgcaggcgtacgagctgctgcgcgagtggggcctgccc
accgcccggcacaacaaggtggtctcctcgctcgccgaggtccgggagttcatcacggaa
ttcggcgcgaaccggcactccgtcgagcacgagatcgacggcgtcgtcgtcaagctcgac
gagatcgccctccagggccggctcggctccaccgcccgcgccccgcgctgggccatcgcc
tggaagtacgcgcccgaagaggtcaacaccaagctgatcgacatcaaggtcggcgtcggc
cgcaccgggcgcgtgaccccgtacgcgcaggtcgagccggtcacggtggccggttccgag
gtcgagttcgcgaccctgcacaaccaggaggtcgtcaaggccaagggcgtgctcatcggg
gacaccgtggtcctgcgcaaggccggtgacgtcatccccgagatcctcggcccggtggtc
gacctgcgcgacggcaccgagcgggagttcgagatgccggccgaatgccccgcctgcggg
accgcgctgcggcccatgaaggagggggacatcgacgtccgctgccccaacgggcagacc
tgccccgcccagttgcgcgagcggatctactacctggcgggccggcaggcgctggacatc
gagaacttcggcatcgtcgcggcggccgcgctgaccggcccgctggagccggccgaaccg
cccctgctcgacgagggcgacctcttcgacctgaccatcgagcaactgctgcccatcaag
gcgtacgtcctggaccaggacagcggactgcccaagcgcgacccgaagacgggcgaggag
aagatcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacgccctggcgatg
ctggagaacatcgcggccgcgaaggagcggccgctcgcccgcatcatcaacggcctgtcc
atccgccatgtcggaccggtcgcggccgaggcgctcgcccgcgagttccgctccatcgcc
gccatcgaggcggcgaccgaggagcaactgaccgcgaccgacggggtcggcgcgatcatc
gccgcctccctcaaggagtggttcgcggtcgactggcaccaggagatcctgcgcaagtgg
cgggaggccggggtgcggatggaggaggaaggttccgccgagcaggaggggccgcggccc
ctggagggactgaccgtggtcgtcaccggcactttgcagaaccacacccgggacggcgcc
aaggaggccctgcagagccgcggcgccaaggtgaccggatccgtctccaagaagacctcc
ttcgtcgtggtcggcgacaaccccggctcgaagtacgacaaggccgtccagttgaagctg
cccgtcctcgacgacgccggcttcgccgtgctgctggagcagggcccggacgcggcgcgc
gaggccgcgctcccggtggacggcgcggccgaaggcgagtag
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