Synechococcus elongatus PCC7942: Synpcc7942_0277
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Entry
Synpcc7942_0277 CDS
T00300
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syf
Synechococcus elongatus PCC7942
Pathway
syf03030
DNA replication
syf03410
Base excision repair
syf03420
Nucleotide excision repair
syf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Synpcc7942_0277
03410 Base excision repair
Synpcc7942_0277
03420 Nucleotide excision repair
Synpcc7942_0277
03430 Mismatch repair
Synpcc7942_0277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syf03032
]
Synpcc7942_0277
03400 DNA repair and recombination proteins [BR:
syf03400
]
Synpcc7942_0277
Enzymes [BR:
syf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Synpcc7942_0277
DNA replication proteins [BR:
syf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Synpcc7942_0277
DNA repair and recombination proteins [BR:
syf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Synpcc7942_0277
NER (nucleotide excision repair)
GGR (global genome repair) factors
Synpcc7942_0277
MMR (mismatch excision repair)
DNA ligase
Synpcc7942_0277
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Synpcc7942_0277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABB56309
UniProt:
Q31RL0
LinkDB
All DBs
Position
complement(271493..273532)
Genome browser
AA seq
679 aa
AA seq
DB search
MTASQTGPTTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPS
LITPDSPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGY
VCELKIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEV
RGEAFLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGP
NDWANLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKL
QSRRLQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGT
TVSRATLHNADRLRELDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLPEKCPEC
GQPVQRPEEEAVTRCVNSTCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIA
DLYRLDAPLLASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATF
TSAEALAQATPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRS
QALAGQTFVLTGTLPTLSRNEAKALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIAL
NIPQLNETQLLDLLAQAEG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcttctcagacgggcccgaccaccaccgcgatcgcccagcgcgccagcgaattg
cgacagctgttgcagcaggccagctatgcctactacgtcctcgatcagccggtgatggaa
gatgcggtctacgatcgcctctatcgggagttgcaagatctagagcagcaacaccccagc
ctgattacgcccgacagccccacgcagcgcgtgggtgagcaaccggcaactggtttcgag
agtgtccagcatcggattccgctctacagtctcgaaaatgcttttgatgctgaagagtta
cggtcttgggatcagcgctggcgtaaactcgcgcccgatgttccggctgatgcaggctac
gtctgtgaactgaaaattgatggagccgcgatcgctctcagctacgaaaacggtctgctg
gtgcggggtgcaactcggggcgacggcacccgtggcgaagaaatcacagcgaatctacgc
acgattaaaagcattccactgcggctccaaaccgaccaaccgcccgagtggttagaagtg
cggggcgaagcttttctgtctctgactcgctttaagcaactcaacaccgaacgggagaag
catggtgaggctctttttgccaacccgcgtaacgccgccgccggaaccttacgccaactg
gatcctcgcattgtcgccgaacgtcagctcgacttttttgcctactcgattcaagggcct
aatgactgggcaaaccttgaccaagccgccagcctcgattgtcttcagagtctgggcttt
cgagtcgaaccgcaccgccaaacctgcccaacgctagcagaagtggagcagtacttcagc
gattgggatgcccgccgccgcgacctgccctatctcaccgatggcgtggttgtgaaactg
caatcacgccgcctgcaagacgagctgggcttcacccagaaatttccacgctgggcgatc
gccctcaaatatccagccgacgaagcgccgacccaactgcagcacgtcactgtccaagtt
gggcgaacgggagcactgacgcctgtggctgaattttctcccgttgcattggcgggaacc
accgtcagccgcgccaccctccacaacgccgatcgcttgcgggaactcgacttacacatt
ggcgacacgatcgtggtgcgcaaggcgggcgaaatcattcccgaagtcgtgcgcgtcctc
actgacctgcggccggccgatgctaaacctgtcgtgctgccggagaagtgtcctgaatgt
ggccagccggtgcaacggcctgaagaagaagccgtcacccgctgcgttaactcaacctgt
cctgcgatcgtgcggggggcactgacccattgggccagccgggatgccctcgacatcgaa
ggtctaggcgaaaagctcgtcgatcaactggtcagcaaaggactcgtcaacgcgatcgcc
gacctctatcgactggatgctccgctcctcgccagtctggagcgctttggtgaaaagtcg
gcacagaatttggttcaggcgatcgcaaagtcacgccagcaaccttggtcgcgagtgctc
tacggtctcgggattcgtcatgtgggatccgtcaacgccaaaaatctggcagccactttc
acctcagctgaggctctcgcgcaagcaacaccggacgaactggccgctgtctatggcatt
ggcagcgaaatcgccgacgcggttcaccagtggttcaccgttgccacgaatcaaaatctg
attgcagcgctagagcaagctgggctgcaactacatggggaagcagcgagcccgcgatcg
caagctttggccggtcaaacctttgtcctgactggcacgctgccgaccctgagccgaaac
gaagccaaagccttgattgaagcggcgggcggcaaagtctcgggctccgtcagcaagaaa
accagctatgttgtcgccggcgaagaagcgggaagcaagctggaaaaagcgatcgccctc
aacattccccaactcaacgaaacacaactgctggacttgcttgcccaagcagaggggtag
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