Synechococcus sp. WH 8109: Syncc8109_2629 Help Entry Syncc8109_2629    CDS       T03783                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism syh  Synechococcus sp. WH 8109 Pathway syh03030   DNA replication syh03410   Base excision repair syh03420   Nucleotide excision repair syh03430   Mismatch repair Brite KEGG Orthology (KO) [BR:syh00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Syncc8109_2629    03410 Base excision repair     Syncc8109_2629    03420 Nucleotide excision repair     Syncc8109_2629    03430 Mismatch repair     Syncc8109_2629  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:syh03032]     Syncc8109_2629    03400 DNA repair and recombination proteins [BR:syh03400]     Syncc8109_2629 Enzymes [BR:syh01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Syncc8109_2629 DNA replication proteins [BR:syh03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Syncc8109_2629 DNA repair and recombination proteins [BR:syh03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Syncc8109_2629    NER (nucleotide excision repair)     GGR (global genome repair) factors      Syncc8109_2629    MMR (mismatch excision repair)     DNA ligase      Syncc8109_2629   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Syncc8109_2629 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT BRCT_2 Zn_ribbon_3 DUF4796_N Motif Other DBs NCBI-ProteinID:  AHF64936 UniProt:  W0H257 LinkDB All DBs Position 1997239..1999281 Genome browser AA seq 680 aa AA seqDB search MADPHERAAELRHLLNRAGHAYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQRPDSPTQ RVGGDPAEGFTNVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELKIDG NALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAFIPD ATFAAINAEREQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQPPGQ WAALEWLNTAGFRVNPNRELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQLQDE AGFTQKAPRWAIALKYPAEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRATLH NADRIAELDLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQQCPECGSNLVREG DEAATRCVNSSCPAILRGGLRHWVSKSALDVDGLGSKLIEQLVERGLVGSLADLYRLDAA LLASLDRMGDKSATNLVEALEASKQQPWHRQLYGLGIRHIGEVNAKALAAAFFSIDSLAA AALEAPEQIAELHGIGPEISASLGQWLRTPANQQLLQDLRSVELSLEASASEQEAASQAG ADADGVLQGKTLVLTGTLPNLSRSEAKALIEAADGKVSGSVSKKTDYLVAGEAAGSKLTK AESLGVTVLSEADLTALLQP NT seq 2043 nt NT seq  +upstreamnt  +downstreamnt atggctgatccgcacgagcgggccgcggagctgcggcacctgctcaaccgtgccggccac gcttattacgttctcgatgcgccagtgatggaggacgcggtctacgaccgcctttatcgc gagctgctcgagctggaacagaacgatccgggcttgcaacggcccgacagtcccacccag cgggtgggcggagatcctgcggaaggattcaccaacgttgagcaccgcgtgggcatgctc agccttgacaacgccttcaaccgcgacgacctacgggcctggcacgagcggctgctcaag gtgctggaccgtcccaacgacacccgcctgcccctggtgggggaactcaaaattgacggc aacgcccttgccctgagctaccgcaacggggtgcttgaacgggccgccacccggggcgac ggcagccgcggcgaagagatcaccgccaacgtgcgcacgatcagctcgattccgctgcgg ctgcagatcgagaacccaccggaatgggtggaagtgcgaggagaggccttcatccctgat gccaccttcgcggcgatcaatgccgaacgggagcaacggggcgaagcgctgttcgccaat ccccgcaacgcctgcgccggaaccctgcgccaactggatccgaaggtagtggccgcccgc cggctcgacttcttcgcctacaccctgcacctgccgggtgacgcccaaccccccggccaa tgggcagctctggagtggctgaacacggccggtttccgcgtgaacccgaaccgagagctc tgcggagagctggccgccatccagcgcttctgcgaccactgggagcagggacgtcatgac ctcccctatgccaccgacggcgtggtggtgaagctggacaacctgcagctgcaggacgaa gccggcttcacccagaaggccccacgctgggccatcgccctcaaatacccggctgaagaa gcccccacccgtctgcttcgaattggtgctcaggtgggccgcaccggtgccatcaccccc gtcgccgaatttgaagcagtcgccctggccggcaccagcgtcagccgcgccaccctccac aacgccgatcggatcgcagaactggatctgcacctgggcgacaccatcgtggtgcgcaaa gccggggagatcattcccgaagtggtgcgggtgctgccggagctcaggcccagcgacgcc accccggtgcaactgccgcagcagtgccccgaatgtggctccaacctggtgagggagggc gatgaagccgccacccgctgcgtgaacagcagctgcccggcgatcctgcggggtggcctg cggcactgggtgagcaagagcgccctggatgtggatgggctcggcagcaagttgatcgaa cagctggtggagcgcggcctggtgggctcgctggcggatctctaccgcctggatgcggcc ctgctcgccagcctggatcggatgggtgacaagtcggccaccaacctggtggaggccttg gaggcttccaaacagcagccgtggcaccgccagctttatggcctcggcatccgccacatc ggcgaggtcaacgccaaagcgctcgcggccgctttcttcagcatcgacagcctggcggca gcagcgctagaggccccggagcagatcgccgaactgcatggcatcggcccggaaatcagc gccagcctgggccaatggcttcgcacccccgccaaccaacagctgctgcaggatttgcgc agcgttgagctctccctggaggcgagtgcctccgagcaggaggccgccagccaagccgga gctgacgccgacggcgtgctgcagggcaaaaccctggtgctcacgggcacactccccaac ctcagccgcagcgaggccaaagcgctgatcgaagcggcggacggcaaggtgagcggcagc gtcagcaagaagaccgactacctggtggcgggcgaagccgcaggcagcaaactgaccaaa gccgagagcctcggggtgacggtgctcagcgaagccgacctcaccgccctgctgcagcca tga

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