Sediminicola sp. YIK13: SB49_05410 Help Entry SB49_05410        CDS       T04145                                  Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism syi  Sediminicola sp. YIK13 Pathway syi03030   DNA replication syi03410   Base excision repair syi03420   Nucleotide excision repair syi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:syi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     SB49_05410    03410 Base excision repair     SB49_05410    03420 Nucleotide excision repair     SB49_05410    03430 Mismatch repair     SB49_05410  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:syi03032]     SB49_05410    03400 DNA repair and recombination proteins [BR:syi03400]     SB49_05410 Enzymes [BR:syi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      SB49_05410 DNA replication proteins [BR:syi03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      SB49_05410 DNA repair and recombination proteins [BR:syi03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      SB49_05410    NER (nucleotide excision repair)     GGR (global genome repair) factors      SB49_05410    MMR (mismatch excision repair)     DNA ligase      SB49_05410   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       SB49_05410 SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 Nlig-Ia BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 HHH HNOB OAS1_C DNA_ligase_A_M Motif Other DBs NCBI-ProteinID:  ALM07299 LinkDB All DBs Position complement(1214509..1216506) Genome browser AA seq 665 aa AA seqDB search MSIKDKIEALRNSLREHNHNYYVLDNPTISDYEFDIMLKELQDLEDQHPEFHDPTSPTLR VGGGITKYFETVAHEHRMYSLENSYSKEDLEDWEKRIQKNLGDVPVEFTCELKYDGASIS LTYEKGQLMRAVTRGDGFQGDDVTTNIKTIKSVPLRLKGDYPEKFDIRGEIVLPFEGFAK MNQERLENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYSIVGSNLNMSSQIQVLEK ARSWGFKVPTVAKVCKSTDEVMAFVDYWDVHRHELPYETDGVVVKVNNLQYQDELGYTAK SPRWAMAYKFKAEQVSTILNEITYQVGRTGAITPVANLKPVLLAGTTVKRASLHNADQIA KLDIREGDTVFVEKGGEIIPKIIGVDFSKRPAHSSPTVYIDHCPECHTKLERTEGDAKHY CTNYYGCPPQITGRIQHYISRKAMDIEGLGGETVELLFKEGLIENYADLYVLTKEQIMPL ERMAEKSAENLVKGVAKSVEIPFERVLFALGIRFVGETVAKKLAKAYKNIDALMSASYDE LMSVDEIGQVIASSVIEFFQNEKNLEIIERLKSYGVQFELSAEKLENQTELLKGSTFVVS GVFEKVSRDELKKLIEDNGGKVGSSISSKTTYLVAGDKMGPSKRTKAEGLNIPIITEDDF LEMLQ NT seq 1998 nt NT seq  +upstreamnt  +downstreamnt atgagcattaaagacaaaatagaggctttacggaatagtttaagggaacacaaccataat tattatgtgttggacaacccgacaatttccgattatgaatttgacattatgctgaaggag cttcaggacttggaagatcagcatccagagtttcatgatccaacgtcaccaacgttgcgt gttggaggaggtataaccaagtattttgaaacagtggctcatgagcatcgaatgtattcc ttggaaaactcctactctaaagaggatttggaagactgggagaagcgtatacaaaaaaat ttaggggatgttcctgttgaatttacctgtgagctaaaatatgatggtgcctccataagt ctcacttatgaaaagggacaattgatgcgtgccgtaacaagaggggatggttttcaaggg gatgatgtaactaccaatattaaaaccattaaatctgtcccgttgcgattaaaaggagat tatcctgagaaattcgatatccgtggggagattgtcctgccttttgagggttttgccaaa atgaatcaagaacgccttgaaaatggggaggatccatacatgaatccacggaatacggct tctggaagtctaaaattacaggatagtgcgctagtggcgcaaagacccttggagtgtttg ttatacagcatcgttggttcaaatttaaatatgtcctctcaaattcaggtattggaaaaa gccaggtcttggggttttaaagtgcccacagtagccaaggtatgtaaatctacggatgaa gtaatggcctttgtagattactgggacgtgcaccgtcacgaactgccatatgaaacagat ggggtcgtggttaaagtgaataatcttcaatatcaggatgagttgggatataccgccaaa tccccaaggtgggccatggcctataagtttaaggcggaacaagtgtctaccatattgaac gagataacctatcaggtgggtagaactggggccattacccccgtagccaatttaaagcct gttttactcgccggtactactgtaaaaagggcctccttacacaatgcagaccagattgca aagttggatattcgggaaggagacactgtatttgttgaaaaaggaggggaaattatacca aaaattataggggtagatttttctaaacgacctgcgcattcttcacctacggtctatatt gaccactgtccggaatgtcataccaaattggaacgaacagagggtgatgccaagcattac tgcaccaactattacgggtgtcctccccagatcacaggtcgtatccagcattacatttca cgcaaagcaatggatatagagggacttgggggtgaaacggtggaactgttgttcaaggaa gggttgattgaaaattatgcagatttatatgtgctgaccaaggaacagatcatgcccttg gagcgaatggcagagaaatctgccgagaacctggttaaaggggttgcaaaatctgttgaa atacctttcgaacgcgtgctttttgctttagggattagatttgtaggggagacagtagct aaaaaacttgcaaaagcatataaaaatatcgatgccctaatgtctgcttcctatgatgaa ttaatgtctgtggatgaaatagggcaggtcattgcatccagtgttattgagttttttcaa aatgaaaagaatctcgagattattgaaaggttgaaaagttatggggtgcagtttgaactt tcggccgaaaaacttgaaaatcagaccgaactattaaaagggtctaccttcgttgtttcc ggagtgtttgaaaaggttagtagggacgagctgaaaaaactgatcgaagacaatggcggg aaagtaggttcttccatttcttccaaaaccacttatttggtggcaggtgataaaatggga ccaagtaaacgtaccaaggccgaaggactcaatattcccataattactgaagatgatttt ttagaaatgctccaataa

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