Sediminicola sp. YIK13: SB49_15430
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Entry
SB49_15430 CDS
T04145
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi00300
Lysine biosynthesis
syi00550
Peptidoglycan biosynthesis
syi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SB49_15430
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SB49_15430
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
SB49_15430
Enzymes [BR:
syi01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
SB49_15430
Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
Precursor biosynthesis
Amino acid ligase
SB49_15430
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Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
YqeC
CbiA
Motif
Other DBs
NCBI-ProteinID:
ALM09027
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Position
3487638..3489101
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AA seq
487 aa
AA seq
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MMLLKDILYGVSLSAVSGSTNVMVNAIVFDSRKVGLDDVFVAIKGTVTDGHKYIEHVVAA
GAKAIICEELPSVMVNGVVYVEVDNGNKALAIMASNYYGNPSKNLKLIGITGTNGKTTIS
SLLYQLFKKAGFKVGLISTIKIMVDDNVYATSHTTPDALTINYHLHLMNEVGVEYCFMEV
SSHGIHQKRTEGLVFAGAIFTNLSHDHLDYHKTFAEYRDTKKILFDKLPKSAFALTNIDD
KNGLVMLQNTKARKFTYALKSYADYRAQILENQFHGQLLKIDGDEVWSRLIGDFNAYNML
AIYSTADLLGLEKLEILRLLSELENVDGRFQYFISKEKITAIVDYAHTPDALKNVLITIN
ALRTGNEKVITVVGCGGDRDKSKRPVMGHIATEFSNQAIFTSDNPRTESPAQIIKDMEEG
VEAQNVRKVLAIENREQAIKTACQLAEANDIILIAGKGHETYQETNGVRVDFDDYKKVKE
LLTMLNK
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgttaaaagacatattgtatggggttagcctatccgctgttagcggaagcacc
aatgttatggtcaatgctattgtttttgattccagaaaggtaggattggatgatgttttt
gtcgccattaaagggactgtcacagatggtcataaatatatagaacatgtagttgcagct
ggcgccaaagcaattatctgtgaagaacttcccagtgtaatggtgaacggggtagtctat
gtagaggttgataatgggaataaagccttggcaatcatggcttcaaactattacggaaac
ccgtccaaaaatttgaaattgatagggataactggtaccaatggtaaaaccactatcagt
agtcttttgtatcagttgtttaaaaaggcaggttttaaagtgggcttgatctccactata
aaaatcatggtagatgacaatgtttatgctaccagccatacgactccagatgccttgacc
attaattatcacttgcatttaatgaacgaggtgggagtcgagtattgttttatggaggtg
agctcccatggaattcatcaaaaaagaacagagggactagtatttgcaggggccattttc
accaatttgtctcatgaccatttagactatcacaagacctttgcagaatatagggatacc
aaaaaaatactttttgataagttacctaaatcagcttttgccctcaccaatatcgatgac
aaaaacggattggtgatgctgcagaacacaaaagccagaaaattcacctatgccttaaaa
tcttacgcagattacagggcccagatcttagagaaccaattccatggtcaattgttaaag
attgatggggatgaggtctggtctaggttgataggggattttaacgcttacaatatgtta
gctatttattccactgccgatcttttgggattggaaaaactggagatattaaggttgctg
agtgaactggaaaatgtagatggcagattccaatattttatatccaaagaaaaaattaca
gcaatagtcgattatgcccatacgccggacgcactaaaaaatgtacttattacgataaat
gcattgaggactggaaatgaaaaagtcattaccgtagtggggtgcggtggtgacagagac
aagtctaaacgtccggttatgggtcatatcgctacagaatttagcaatcaggccattttc
acttcggataatccacgtacagaatctcctgcacagattattaaggatatggaagaaggg
gtagaggcgcaaaatgtacgcaaggtacttgctattgaaaatagggagcaggcaattaaa
acagcttgtcaattggcagaggccaatgatatcatcctcatagcgggaaaaggccatgag
acctaccaggagaccaatggggtgcgggtagattttgatgattataaaaaagtgaaggaa
ttattaacgatgttaaataagtag
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