Shewanella yunxiaonensis: KDN34_07705
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Entry
KDN34_07705 CDS
T07775
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03030
DNA replication
syk03410
Base excision repair
syk03420
Nucleotide excision repair
syk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDN34_07705 (ligA)
03410 Base excision repair
KDN34_07705 (ligA)
03420 Nucleotide excision repair
KDN34_07705 (ligA)
03430 Mismatch repair
KDN34_07705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syk03032
]
KDN34_07705 (ligA)
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_07705 (ligA)
Enzymes [BR:
syk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDN34_07705 (ligA)
DNA replication proteins [BR:
syk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDN34_07705 (ligA)
DNA repair and recombination proteins [BR:
syk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDN34_07705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDN34_07705 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDN34_07705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDN34_07705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QUN07292
LinkDB
All DBs
Position
1677419..1679464
Genome browser
AA seq
681 aa
AA seq
DB search
MRPLFSADLFMQLTTEQEIDQLIREINEHNIRYYVDDNPSIPDAEYDRLMRRLQSLEAEN
PQLLRADSPSRRVGGAALAKFEQVTHLKPMLSLDNVFDDAEFSAFHKRVSDRVGDVQYCC
EPKLDGLAVSMLYRDGVLERAATRGDGAVGEDITENVRTIKSIPLKLCGSGYPPLLEVRG
EVFMPRAAFDALNERARVRNEKVFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP
EGFAMADTHRGQLAQLQQWGLPVSSEIKLADSLAEVEAYYQQIMARRPTLAFDIDGVVFK
VNSIAAQQALGFVAKAPRWAIAYKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVGG
VTVSNATLHNADEIERLGVKVGDTVIIRRAGDVIPQVVAVVLEKRPEYAEAIQFPHDCPV
CGSLVERIEGEAVARCTGGLFCKAQRKEAIKHFASRKAMDIDGLGDKIVEQLIDKELIES
PADLFRLSVSTLASLERMGIKSAENLKVALNAAKTTTLSKFLYSLGIREVGEATAANLAH
HFKTLDALRQASVEQLMAVEDVGNVVAQHVVHFFAQPHNQQVIDTLISADIGVHWPMIET
PDEEAQPLKGQTWVLTGTLTQFSRSDAKARLEALGAKVAGSVSKNTDCVVAGEAAGSKLT
KATELGVRVIDEQQLVALLND
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctttattttcagcggacctttttatgcaactcactactgaacaagaaatcgat
caactgatccgcgagattaacgaacacaatatccgttactacgtggatgataatccctca
attcccgatgctgaatatgatcgcttgatgcgacgattgcagtctttagaggccgaaaat
ccgcaacttttgcgagctgattcgcccagtcgccgagtgggcggcgcggccttggccaaa
tttgagcaggtgacacatctcaagccgatgttgagtctggataacgtgttcgatgatgcc
gaattttccgcatttcacaaacgagtcagtgatagggttggtgatgtgcaatattgctgt
gagccgaagttggatggtcttgcagtgagtatgctttaccgtgatggcgtattggaacgt
gcagcgacgcgcggtgatggtgcggtaggtgaagatatcaccgaaaacgtgcggaccatt
aaatcgattccgttgaagttgtgcggcagtggttatccgccactgctggaagttcgtggc
gaagtgtttatgccgcgggcagcgtttgatgcactcaatgaacgggctcgtgtacgtaac
gaaaaagtttttgtgaacccaagaaatgcagcggcaggcagtttgcgacaacttgatagt
aaaatcactgcctcaagatcgctggctttttatgcttatgccctaggggtggttgaacct
gaagggtttgccatggcagatacccatcgcggtcaattggcgcaattgcagcaatggggc
ttgccggtaagcagtgagattaaactggcggattcattggcggaagtagaggcctattac
cagcagataatggcacggcgtccgacactggcatttgatattgatggtgtggtgtttaag
gtcaatagcattgccgcccagcaagcattaggttttgttgctaaggcacctcgttgggcc
attgcgtataaatttccagcacaggaagagatgacagtgttggaaggtgttgattttcag
gtgggacgtaccggggcggtgacgcctgtggcgcgcttaaagccggtgtttgtcggtggt
gtcacggtgtccaacgccacattgcataatgccgatgaaatagaacgtttaggcgtgaaa
gtgggggatactgttattattcggcgcgcaggggatgtgatccctcaagtggtcgctgta
gtgctggaaaaacgtcccgaatatgctgaagctattcaattcccccacgattgcccagtg
tgtggttcattggttgaacgtattgaaggcgaagccgttgcgcgttgtaccggaggtttg
ttttgtaaggctcagcggaaagaggcaatcaagcattttgcatctcgaaaggcgatggat
attgatgggcttggcgataaaattgttgagcagttaatcgataaagaactgatcgaaagt
ccggcggatctgtttcgtctcagtgtctctacgctagcatcgcttgaacgcatgggcatt
aaatctgcggaaaacctcaaagtggcattgaacgcagctaaaaccacaacactatccaag
tttttgtattctttggggatccgtgaggttggcgaagcgactgcggccaatcttgcccat
cattttaaaacgttagacgcactgcgacaggcaagtgttgaacagttaatggcggtggaa
gatgtgggcaatgtggtggcgcagcacgtggtacatttttttgcacagccccataaccaa
caggtaatcgataccttaattagtgctgatattggtgtgcactggcctatgattgaaacg
ccagatgaagaagcgcaaccgcttaagggccagacctgggtcctcacggggacgctcacc
caatttagccgcagtgatgctaaagccaggttagaagcgctgggtgccaaggtggcgggc
agcgtgtcaaaaaataccgattgtgtggttgccggtgaagccgccggctctaagttaacc
aaagctaccgagttaggggtgcgggttatagatgagcagcaattggtggcgcttctcaat
gattga
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