Picosynechococcus sp. PCC 7003: AWQ21_13375
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Entry
AWQ21_13375 CDS
T05991
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syl
Picosynechococcus sp. PCC 7003
Pathway
syl03030
DNA replication
syl03410
Base excision repair
syl03420
Nucleotide excision repair
syl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWQ21_13375 (ligA)
03410 Base excision repair
AWQ21_13375 (ligA)
03420 Nucleotide excision repair
AWQ21_13375 (ligA)
03430 Mismatch repair
AWQ21_13375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syl03032
]
AWQ21_13375 (ligA)
03400 DNA repair and recombination proteins [BR:
syl03400
]
AWQ21_13375 (ligA)
Enzymes [BR:
syl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWQ21_13375 (ligA)
DNA replication proteins [BR:
syl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWQ21_13375 (ligA)
DNA repair and recombination proteins [BR:
syl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWQ21_13375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWQ21_13375 (ligA)
MMR (mismatch excision repair)
DNA ligase
AWQ21_13375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWQ21_13375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_3
BRCT_2
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ANV85696
UniProt:
A0A1B1TTJ3
LinkDB
All DBs
Position
2817013..2819034
Genome browser
AA seq
673 aa
AA seq
DB search
MSDAPQARLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETEHPQLITPDSPT
QRIGDQPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPRHSGYVCELKID
GSAIALTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLP
LETFEKINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPDFSNSPQ
LNSQWEALEFLKKMGFRVNPNRELCPDLAAVKNYFERWDKGRKKLSYLTDGVVVKLNDFS
LQAELGFTQKFPRWAIALKYAAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQR
ATLHNEDRIKELDIRIGDTVVIRKAGEIIPEVLRVLVDLRPEATVPYQFPSHCPECNSAL
VRPSGEAVARCVNSSCPAILRGSLVHWAGRDALDIQGLGEKNVILLIEHGLVQSIADIYD
LTSEQLQSLPRLGQKSAANLIQAIAHSKNQDYARVLYGLGIRFVGKVNAEILAQNFPTLD
QLQKATFAQLQGVYGIGEEIAQSVVDWFRVDANQQLIEKLKKAGLTFSQTQTAQTEINHQ
IAGKTFVITGTLPTLKRTEAAEKIKAAGGKVTGSISKNTDYLVAGENAGSKLDKARQLGV
QELNESQLLDLLA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgccccccaagcccgcctggcccaactgcgatcgcaactgcaaaaagcggcc
tacgcttactatgtcctcgatgcgccattcatggaggatgccgtttatgaccagctttat
cgggaactggtggccctggaaacggaacatccccaactcattacccccgacagtcccact
cagcggatcggcgatcaacccgccacccaattcaccagcgtcaagcacaatattcccctc
tatagcctagaaaatgcctttgactttggggaactaacccagtgggaacagcggtggcag
cgggctttagccggagaaatccctcgccattccggttatgtgtgcgaacttaaaatcgat
ggttcggcgatcgccttaacctacgaaaacggcattttagtgcggggggccacccggggc
gacggtgtgacaggcgaagaaatcacccaaaatctgcgcaccattcgcaccattcctttg
cgtttaaacctcgataatccgcctcctttagtggaagtgcggggagaagcctttttacct
ttagagacctttgaaaaaattaaccaggagcgagaaaaagcgggtgaaaatctatttgcc
aatccgagaaatgccgccgccggtactttacgacaactcgattctcgcatcgttgccgcg
cgcaagttagacttttttgcctacaccctccacctcccagactttagcaattctccccaa
ctaaacagccaatgggaagccctagaatttctgaaaaaaatgggttttcgggtcaatcca
aaccgcgaactttgtcctgatttagctgctgtaaaaaactattttgaaagatgggataaa
ggccggaaaaaactgtcttacctgaccgatggggtggtcgttaaactgaatgatttttcc
ctccaggctgagttgggcttcacccaaaaatttccccgctgggcgatcgccttaaaatat
gctgccgaggaagctcccaccatcgtcaaagacatcatcgtcaacgtgggcagaacgggt
gctgtcactcccatggccgtcatggaaccggtgcaattagcagggacgacggtacaacgg
gccaccctccataacgaagaccgcattaaagaattagacatcagaatcggtgatacggtt
gttattcgcaaagcaggggaaattatcccggaagttttacgagttttagttgatttacgc
ccagaagcgactgttccctatcaattccctagccattgccccgaatgcaactcagccctg
gtgcgtccctctggagaagccgttgcccgttgcgtcaacagctcatgcccagcgattttg
cggggttccctcgtccattgggctggccgtgacgccctcgatatccagggtttaggcgaa
aaaaatgtgattcttttgatcgagcatggtctagtgcaatccatcgccgatatctatgac
ctgaccagcgaacaattacaatctctcccgcgcctggggcaaaagtcagcggcaaattta
atccaggcgatcgcccactcaaaaaatcaagactatgcccgtgttttgtatggtctaggt
atccgctttgtggggaaagtgaatgcggaaattttggcgcaaaacttcccaactttagac
caactccaaaaagccacctttgcccaattacaaggggtttatggcattggcgaagaaatt
gctcagtccgtcgtcgattggttccgggttgatgccaatcaacaattaattgaaaaactg
aaaaaagctggcttgaccttttcccaaacccagaccgcacaaaccgaaattaaccatcag
attgccggtaaaacctttgtgatcacaggtaccttacccaccctcaaacgcactgaagcc
gccgaaaaaatcaaagctgctggcggaaaagtgacgggttctattagtaaaaatactgat
tatcttgtggctggtgaaaatgccggatctaaattagacaaagcccgtcaattgggggtt
caagaactgaatgaaagtcagcttttagatttgttggcatag
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