Synechococcus sp. CB0101: CB0101_07585
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Entry
CB0101_07585 CDS
T06409
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03030
DNA replication
sync03410
Base excision repair
sync03420
Nucleotide excision repair
sync03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CB0101_07585 (ligA)
03410 Base excision repair
CB0101_07585 (ligA)
03420 Nucleotide excision repair
CB0101_07585 (ligA)
03430 Mismatch repair
CB0101_07585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sync03032
]
CB0101_07585 (ligA)
03400 DNA repair and recombination proteins [BR:
sync03400
]
CB0101_07585 (ligA)
Enzymes [BR:
sync01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CB0101_07585 (ligA)
DNA replication proteins [BR:
sync03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CB0101_07585 (ligA)
DNA repair and recombination proteins [BR:
sync03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CB0101_07585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CB0101_07585 (ligA)
MMR (mismatch excision repair)
DNA ligase
CB0101_07585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CB0101_07585 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
zf-tcix
DUF7340
DUF4796_N
Zn_Ribbon_TF
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QCH16223
LinkDB
All DBs
Position
1404176..1406221
Genome browser
AA seq
681 aa
AA seq
DB search
MAAPHARAAELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIAPDSPTQ
RVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALPMVGELKIDG
NALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLEVRGEAFIPD
GTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPPGTQGPAS
QWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVVKLNDLALQD
AAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLAGTSVSRATL
HNADRLVELDLHAGDTIVVRKAGEIIPEVVRVLAELRPAGAQRLELPHTCPECGSELVRE
EGEAATRCVNSSCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDRGLVGSIADLYRLDG
ALLASLERMGSKSADNLVAALAASKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAAELA
TAATDTPELITAVYGIGGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAER
SAASAQLNGQTFVLTGTLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSK
AESLGVAVLDEAGLQALLGSS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
ctggctgcaccacacgcccgtgccgctgaactgaggcagctgctcaatcgcgcggctcat
gcctactacgtgctcgatgctcctgagatggaggatccggtctacgaccggctctaccgc
gagctgctcgatctcgaaaccgcccacccggagctgatcgccccagatagccccacccag
cgcgtgggaggggcaccagctgaggggttccagtcggtgcagcaccgcatcgggttgctc
agcctcgacaacgccttcaacacaggcgagctcgaggcctggtacgcccgcctactgaag
gtgctcgaccgcgagcccgccgccgcgctgccgatggtgggcgagctgaagatcgacggc
aacgccctggccctcagctacgagcacggcgtgctggtgcgggccgccacccgcggtgac
ggcgagcagggcgaagagatcaccgccaacgtgcgcaccattggctcggtgcccctgcgc
ctgcagctcgagcacccaccggagtggctggaggtgcgcggcgaagcattcatccccgat
ggcaccttcaccgccatcaatgccgagcgcgagagccggggcgaagcgctcttcgccaac
ccccgcaacgcctgtgccggcaccctgcgccaactcgatcccaaggtggtagcggcccgg
cggctcgatttcttcgcctacacgctgcacttgccgcccggcacgcaaggaccggccagc
cagtgggagtcgctgcagtggctcaaggccgccggcttcaaggtgaaccccaacgccgaa
ctgctgccggatctggcggcggtggaggctttcttcgagcgctgggacacgggccgccgc
cagctcgactacgccaccgacggcgtggtggtgaagctcaacgacctagcgctgcaggat
gccgccggcttcacccagaaagcgccgcgctgggccatcgccctcaaataccccgccgaa
gaggcccccagcaagctgctgcgcttggcgtgtcaggtgggacgcaccggggtcgtgaca
ccggtcgctgaatttgaacccgtgcccctagccggaaccagcgtgagccgcgccaccctg
cacaacgccgaccgcctggtggagctggatctgcacgccggcgacacaatcgtggtgcgc
aaggccggcgagatcatccctgaggtggtgcgggtgctggcggagctacggcccgccggt
gcccagcgcctcgaactcccccacacctgcccggaatgcggctcggaactggtgcgtgag
gagggtgaagccgccacccgctgcgtgaacagcagctgcccggcgatcctgcgcggcgcc
ctgcgccactgggtgagcaagggggccctggatgtggatgggctcggcagcaaattgatc
gagcagctggtggaccgtggcctggtgggctcaatcgccgatctctaccggctcgatgga
gcgctgctggccagcctggagcgcatgggcagcaagagcgccgacaacctggtagctgcc
ctggccgcctccaaagcccagccctggaaccggcagctctatggcctggggatccaccac
gtgggcgaagtgaatgccaaaacgctggcctccgccttccccagcgctgcggagctggcc
accgcggccaccgacacgcccgagctgatcacagccgtgtatggcatcggcggcgagatc
gcccagagcctgcagcagtggtttgccacggcggccaaccaggagctgctgagccaactc
gaacgcctgggcttttcgctcgccaccagtgacgaagaactggcagccgccgcggagcgc
agtgcagccagcgcccagctcaacggccagacgtttgtgctcaccggcaccctgccctcg
atgagccgcagcgaagccaaggccctgatcgaagccgccggcggcaaggtgagcggctca
gtgagcaaaaagaccagctacgtggtggctggcgacgaagccggcagcaaactcagcaag
gccgaaagccttggggtggcggtgctggatgaggccgggctacaggcgctgctgggaagc
agctga
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