Synechococcus sp. KORDI-100: KR100_00040
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Entry
KR100_00040 CDS
T03344
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03030
DNA replication
synk03410
Base excision repair
synk03420
Nucleotide excision repair
synk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KR100_00040
03410 Base excision repair
KR100_00040
03420 Nucleotide excision repair
KR100_00040
03430 Mismatch repair
KR100_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
synk03032
]
KR100_00040
03400 DNA repair and recombination proteins [BR:
synk03400
]
KR100_00040
Enzymes [BR:
synk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KR100_00040
DNA replication proteins [BR:
synk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KR100_00040
DNA repair and recombination proteins [BR:
synk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KR100_00040
NER (nucleotide excision repair)
GGR (global genome repair) factors
KR100_00040
MMR (mismatch excision repair)
DNA ligase
KR100_00040
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KR100_00040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AII41798
LinkDB
All DBs
Position
4084..6132
Genome browser
AA seq
682 aa
AA seq
DB search
MPDPHERAAELRHLLNRAAHAYYVLDAPVMEDAVYDRLYRELSELEASDPALQRPDSPTQ
RVGGVPAEGFTNVEHRVGLLSLDNAFNRDDLQAWHERLLRVLDRPDDTRLPLVGELKIDG
NALALSYRHGVLERAATRGDGARGEEITANVRTISSIPLRLQVNNPPEWVEVRGEAFIPD
ATFAAINAEREQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPDDAQPSSQ
WDALEWLNTAGFRVNPNRELCADLAAINRFCDHWEQGRHELPYATDGVVVKLNDLLLQDE
AGFTQKAPRWAIALKYPAEEAPTRLLRVGAQVGRTGAVTPVAEFEAVALAGTSVSRATLH
NADRIAELDLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQHCPECGSSLVREG
DEAATRCVNSSCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVDRGLVRSLADLYRLDAA
LLASLDRMGAKSATNLVAALEASKQQPWHRQLYGLGIRHIGEVNAKALAAEFFSSDSLAT
AALEAPEQISELHGIGPEISASLGQWLGTPANQQLLKDLRSVGLSLEASASEQEAASQAG
ADTDGVLRGKTLVLTGTLPSLSRSEAKALIEAAGGKVSGSVSKKTDYLVAGEAAGSKLSK
AESLKITILDESAFQQLLEQSQ
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatccgcacgagcgggccgcggaactgcggcatttgctcaaccgtgcagcccac
gcttactacgtcctcgatgctccggtgatggaggacgcggtctacgaccgcctctaccgc
gagctttcggagctggaagccagcgatccagccctgcagagacccgacagccccacccag
cgggtgggtggggttccagcggaaggattcaccaacgttgagcaccgtgtgggcctgctc
agcctcgacaacgccttcaaccgcgacgacctgcaggcctggcacgaacggctgctcagg
gtgcttgaccgccccgacgacacgcggctgcccctggtgggggaactgaaaattgacggc
aacgcccttgccctgagctaccgccatggggtgttggaaagggccgccacccgtggcgac
ggcgcgcgcggtgaggagatcaccgccaacgtgcgcacgatcagctccatcccgcttcgc
ctgcaggtcaacaacccaccggagtgggtggaggtgcgtggcgaagccttcatccccgat
gccaccttcgcggcgatcaatgccgagcgggagcaacggggcgaagccctgttcgccaat
ccccgcaacgcctgcgccggaaccctgcgtcaactggatccgaaggtggtggccgcccgc
cggctcgacttcttcgcttacaccctgcatctgccggatgacgcccaaccttccagccaa
tgggatgctctggagtggctcaacacagccggctttcgcgtgaacccgaaccgggagctc
tgtgcagacctggccgccatcaatcgcttctgcgaccactgggagcagggtcgccatgag
ctcccctatgccaccgacggcgtggtggtgaagctgaacgacctgctgctgcaggacgaa
gccggcttcacccagaaagcaccgcgctgggcgatcgccctcaaataccctgccgaagaa
gcccccacccgtctgctgcgtgttggtgctcaggtggggcgaaccggtgctgtcaccccc
gtcgctgaattcgaagcggtggcgctagccggcaccagcgtcagccgcgccaccctgcac
aacgccgatcggatcgctgaactggatctgcatctgggcgacaccatcgtggtgcgcaag
gccggggagatcatccccgaagtggtgcgggtgctgccggagctcaggccaagcgacgcc
acccctgtgcaactgccgcagcactgccccgaatgtggctccagcctggtgagggagggc
gacgaagccgccacccgctgtgtgaacagcagctgcccggcgatcctgcggggtggcctg
cggcactgggtgagcaagggcgccctggatgtggatggccttggcagcaagttgatcgaa
cagctggtggaccgcggcctggtgcgctcgctggccgatctctaccgcctggatgcggcc
ctgctcgccagcctggatcgcatgggcgccaagtcggccaccaacctggtggcggccctc
gaagcctccaaacagcagccctggcatcgccagctctacggcctcggcatccgccacatc
ggcgaggtcaacgccaaagcgctcgctgctgagttcttcagcagcgacagcctggcgaca
gcggccctggaggccccggagcagatctccgaactgcatggcatcggcccggaaatcagc
gccagcctcggccaatggctgggcacgcctgccaaccaacagctgctcaaagacttgcgc
agcgtcggcctctccctggaagccagtgcctcagagcaggaggccgcaagccaggccgga
gctgacaccgacggggtgctgcggggcaaaaccctggtactcacgggcacgctccccagc
ctgagccgcagcgaggccaaagcgctgatcgaagcggcgggcggcaaggtgagcggcagc
gtcagcaagaaaaccgactacctggtggcgggcgaggccgctggaagcaaattgagcaaa
gccgagagcctgaagatcacgattctcgatgaatctgcattccagcaacttcttgagcaa
agccagtaa
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integrated database retrieval system
