Synechococcus sp. WH 8101: SynWH8101_2753
Help
Entry
SynWH8101_2753 CDS
T10836
Name
(GenBank) ligA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
synu Synechococcus sp. WH 8101
Pathway
synu03030
DNA replication
synu03410
Base excision repair
synu03420
Nucleotide excision repair
synu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SynWH8101_2753
03410 Base excision repair
SynWH8101_2753
03420 Nucleotide excision repair
SynWH8101_2753
03430 Mismatch repair
SynWH8101_2753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
synu03032
]
SynWH8101_2753
03400 DNA repair and recombination proteins [BR:
synu03400
]
SynWH8101_2753
Enzymes [BR:
synu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SynWH8101_2753
DNA replication proteins [BR:
synu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SynWH8101_2753
DNA repair and recombination proteins [BR:
synu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SynWH8101_2753
NER (nucleotide excision repair)
GGR (global genome repair) factors
SynWH8101_2753
MMR (mismatch excision repair)
DNA ligase
SynWH8101_2753
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SynWH8101_2753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
zf-tcix
Zn_Ribbon_TF
DUF4796_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QBE70319
LinkDB
All DBs
Position
2524621..2526705
Genome browser
AA seq
694 aa
AA seq
DB search
MTRPSGERARELRTLLNRAAHAYYVLDSPEMEDPVYDRLYRELVELEQADPSLLSPDSPT
QRVGGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYGRLIRVLDREPGAGDPLPALPMVG
ELKIDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLTHPPDWLEVRG
EAFIPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPDD
WEAEGSDPARPSSQWESLQWLRRAGFKVNPNAELLPDLAAVEAFFSAWDTGRHALDYATD
GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAEFEA
VPLAGTSVSRATLHNADRLAELDLHAGDTIVVRKAGEIIPEVVRVLTELRPADAGRLELP
HTCPECGSALVREEGEAATRCVNSSCPAILRGALRHWVSKAALDVDGLGSKLIEQLVDRG
LVGSIADLYRLDAALLSSLERMGQKSADNLVAALADSKAQPWHRQLYGLGIHHVGEVNAK
ALATTFPSAADLATAAADHTDAITAVFGIGAEIAQSLQQWFATPANLNLLSELERLGFSL
ASSEEELQAAAERSTASAQLNGQTFVLTGTLPSLSRSQAKELIEAAGGKVSGSVSKKTSY
VVAGEEAGSKLSKAENLGVPVLDEAGLQALLAAS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcccatccggggaacgggcacgggagctgcgcaccctgctcaatcgcgctgcc
cacgcctattacgtgctggattctcccgagatggaggatccggtgtatgaccggctctac
cgggaactggtggagctcgagcaggcggatcccagcctgctcagccccgacagccccacc
cagcgcgtcggcgggccacctgccgcgggcttccagagcgtgcgccatcgcatcggcctg
ctcagcctcgacaacgcgttcaacatcggcgagctggaggcctggtacggccggctgatc
cgggtgctcgaccgcgagcctggcgccggtgaccccctgccggcgctgccgatggtgggg
gaactgaaaatcgacggcaatgccctggccctgagctacgagcagggcgttctggtgcgg
gccgccacccgcggcgacggcgagcagggcgaggccatcactgccaatgtgcgcacgatc
ggcgccgtgccgttgcgcctgcagctcacacatccaccggactggctggaagtgcgcggc
gaggccttcatccccgatggcaccttcagcgcaatcaacgcggaacgggaggcccgcggc
gaggccctgttcgccaacccgcgcaacgcctgtgccggcaccctgcgccagctcgacccg
aaggtggtggcagcgcgtcgtctcgattttttcgcctacaccctgcacctacccgacgac
tgggaggcggaaggcagcgacccggcccgccccagcagccaatgggaaagcctgcagtgg
ctgaggcgggcaggtttcaaggtgaaccccaacgccgaactgctgccggatctggcagcg
gtagaagccttcttctccgcctgggacacgggccgccacgccctcgattacgccaccgac
ggcgtggtggtgaaactcaacgacctacgcctgcaggatgcggccggtttcacccagaag
gcaccgcgctgggcgatcgccctcaagtatccggccgaggaggcccccagcaagctgttg
cgtctgacctgccaggtgggacgcaccggggtggtgacgccggtggccgagtttgaagcg
gtgccgctggctggcacgagcgtcagccgcgccaccctgcacaacgccgatcgcctggcg
gaactggatctgcacgccggtgacacgatcgtggtgcgcaaggccggcgaaatcatcccc
gaggtggtgcgggttctcacagagctgcggccagcggatgcagggcgactcgaactgccc
cacacctgcccggaatgcggctccgcactggtgcgtgaagagggcgaagccgccacccgc
tgcgtgaacagcagctgcccagcgatcctgcgcggcgccctgcgccactgggtgagcaaa
gcggccctggatgtggatgggctcggcagcaaattgatcgagcagctggtggatcggggc
ctggtgggctcgatcgccgatctctaccggctcgatgccgccctgctctccagcctggag
cgcatgggccagaaaagcgccgacaacctcgtcgccgccctggccgactccaaagcgcag
ccctggcaccggcagctctatgggctcggcattcaccatgtgggggaggtgaacgccaaa
gctctcgctaccaccttccccagtgccgcggatctggctacggccgccgctgatcacacc
gacgcgatcaccgccgtgttcggcatcggcgccgagatcgcccagagcctgcagcagtgg
ttcgccacccccgccaacctgaacctgctatctgaactggaacgcctgggcttcagcctc
gccagcagtgaagaggaactccaggccgccgcagaacgcagcaccgccagcgcccagctc
aacggccagaccttcgtgctcaccggcaccctgcccagcctgagccgcagccaggccaag
gagctgatcgaagccgccggcggcaaggtgagcggctcagtcagcaaaaaaaccagctac
gtggtagccggcgaggaggccggcagcaaactcagcaaggccgaaaaccttggggttccg
gtgctggatgaggcagggctgcaggctttgctggctgcaagctga
DBGET
integrated database retrieval system
