Synechococcus sp. CBW1002: H8F24_04400
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Entry
H8F24_04400 CDS
T10440
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03030
DNA replication
synz03410
Base excision repair
synz03420
Nucleotide excision repair
synz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H8F24_04400 (ligA)
03410 Base excision repair
H8F24_04400 (ligA)
03420 Nucleotide excision repair
H8F24_04400 (ligA)
03430 Mismatch repair
H8F24_04400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
synz03032
]
H8F24_04400 (ligA)
03400 DNA repair and recombination proteins [BR:
synz03400
]
H8F24_04400 (ligA)
Enzymes [BR:
synz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H8F24_04400 (ligA)
DNA replication proteins [BR:
synz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H8F24_04400 (ligA)
DNA repair and recombination proteins [BR:
synz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H8F24_04400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H8F24_04400 (ligA)
MMR (mismatch excision repair)
DNA ligase
H8F24_04400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H8F24_04400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
zf-tcix
Zn_ribbon_Top1
Auto_anti-p27
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QPN60647
UniProt:
A0A7T1HS07
LinkDB
All DBs
Position
complement(930549..932705)
Genome browser
AA seq
718 aa
AA seq
DB search
MAAVSTTDPRGGAPNGGGGPAPGAARQRAEELRRLLSRAAHAYYVLDAPAMEDPVYDRLY
RELLELEGTHPELITPDSPTQRVGGAPAEGFVSVAHRIGLLSLDNAFSLEELEAWYGRLL
KVLDRQPQPGAPLPALAMVGELKIDGNALALSYEHGLLVRAATRGDGERGEEITANVRTI
QSVPLRLQLKRPPEWVEVRGEALIPDATFAAINVERQARGEALFANPRNACAGTLRQLDP
RVVAARRLDFFAYTLHLPDDWQPAAADPQRPTGQWQALQWLQRAGFRVNPNASLLNDLAA
VEAFFAQWEEGRRQLPYATDGVVVKLNDLRLQADAGFTQKAPRWAIALKYAAEEAPSKLL
RLACQVGRTGVVTPVAEFEPVPLAGTTVSRATLHNADRLAELDLHAGDTIVVRKAGEIIP
EVVRVLPELRPAAAPRLALPQTCPECGSELVREKGEAATRCVNSSCPAILRGALRHWVSK
GALDVDGLGGKLIEQLVDRGLVASIADLYRLDAALLASLERMGEKSAANLVAALAASRTQ
PWPRQLYGLGIHHVGEVNAKALARAFPSAADLAAAAADSPERIIAVFGIGGEIAQSLQQW
FGTPANQALLAELEQLGFSLAFSAAEQQAMAGPSEGAAALAAPLAGSTFVLTGTLPSLSR
RQAQERIEAAGGKVTGSVSKKTSYVVAGEEAGSKLAKAESLGVAVLDEAALLALLAEA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgagcacgacggacccgaggggcggcgcccccaacggcggtggcggccca
gccccgggggccgcgcggcagcgggccgaggagctgcggcggctgctcagccgcgccgcc
catgcctattacgtgctcgacgcccccgcgatggaggatccggtctacgaccggctctac
cgggagctgctggagctcgaggggacccatcctgagctgatcacgccggacagcccgacc
cagcgcgtcggtggggccccggccgaggggttcgtgagtgtggcccaccgcatcggcctg
ctcagcctcgataacgccttctccctcgaggagctggaggcctggtacggacggctgctc
aaggtgctggatcgccagccccagcccggcgctcccctgccggccctggcgatggtgggc
gagctcaagatcgacggcaacgccctcgccctcagctacgagcacggcctgctggtgcgg
gccgccacccgcggcgacggcgagcggggcgaggagatcaccgccaacgtgcgcacgatc
cagagcgtgccgctgcggctccagctcaagcgcccgccggagtgggtggaggtgcgcggc
gaggccctgatccccgacgcgacctttgccgcgatcaatgtcgagcggcaggcccggggc
gaggccctgttcgccaatccccgcaacgcctgcgccggcaccctgcgccagctggatccg
cgggtggtggccgcccgccggctcgatttcttcgcttacaccctgcatctgccggacgac
tggcagcccgccgccgctgatccccagcgccccaccggccagtggcaggcgctgcagtgg
ctgcagagggccgggttccgggtgaatcccaatgcctcgcttctgaacgatctggcggcg
gtggaggccttcttcgcccagtgggaggaggggcgccggcagctgccttatgccaccgac
ggcgtggtggtgaagctcaacgatctgcgcctgcaggccgatgccggcttcacccagaag
gcaccccgctgggcgatcgcgctcaagtacgccgccgaggaggcccccagcaagttgctg
cggctggcctgccaggtgggacgcaccggcgtggtgacgcccgtggccgagttcgagccg
gtccccctggccggcaccacggtgagccgcgccaccctccacaacgccgaccgcctggcg
gagctggatctccatgccggcgacacgatcgtggtgcgaaaggccggcgagatcattccg
gaggtggtgcgggtgctgccggagctgcggcctgcggcggctccgcggctggccttgccc
cagacctgcccggaatgtggctcggagctggtgcgggagaagggcgaggcggccacccgc
tgcgtcaacagcagctgcccggcgatcctgcggggcgccctgcgccactgggtcagcaag
ggggccctggatgtggacggcctcggcggcaagctgatcgagcagctggtggatcggggc
ctggtggcctcgatcgccgatctctaccggctcgatgcagccctgctggccagcctggag
cggatgggcgagaagagtgccgccaatctggtggcggccctggcggcctccagaacccag
ccctggccgcggcagctctacgggctcggcatccatcacgtgggggaggtgaatgccaag
gccctggcccgcgccttccccagcgccgccgatctggccgccgccgccgccgacagcccg
gagcggatcatcgccgtgttcggcatcggcggggagatcgcccagagcctgcagcagtgg
ttcggcaccccggccaaccaggccctgctggcggagctggagcagctcggcttctccctg
gccttcagtgcggccgagcagcaggccatggccggtcccagcgagggggccgcggccctg
gcggcgcccctggctggctccaccttcgtgctcaccggcaccctgcccagcctcagccgc
cgccaggcccaggagcggatcgaggccgccggcggcaaggtcaccggctcggtgagcaag
aagaccagctacgtggtggccggcgaggaggccggcagcaagctggccaaggcggaaagc
ctcggagtggcggtgctggatgaagcggctctgctggccctgctggccgaagcatga
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