Shewanella youngdeokensis: RGE70_11290
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Entry
RGE70_11290 CDS
T10660
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03030
DNA replication
syou03410
Base excision repair
syou03420
Nucleotide excision repair
syou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE70_11290 (ligA)
03410 Base excision repair
RGE70_11290 (ligA)
03420 Nucleotide excision repair
RGE70_11290 (ligA)
03430 Mismatch repair
RGE70_11290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syou03032
]
RGE70_11290 (ligA)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_11290 (ligA)
Enzymes [BR:
syou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGE70_11290 (ligA)
DNA replication proteins [BR:
syou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGE70_11290 (ligA)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGE70_11290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE70_11290 (ligA)
MMR (mismatch excision repair)
DNA ligase
RGE70_11290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGE70_11290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WOT03921
LinkDB
All DBs
Position
complement(2645558..2647564)
Genome browser
AA seq
668 aa
AA seq
DB search
MHAIELEIAELTDQLNQHNYHYYVDDNPTIPDAEYDRLLKRLIELETEHPALLKADSPTQ
RVGGEALAKFEQITHLKPMLSLDNVFDESEFSAFHSRITDRVGTELTYCCEPKLDGLAVS
ILYRDGIFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAFD
ALNKRAQAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWELADSHY
GQLAQLRSWGVPVSQEVKECAGVAQVMEYYNDIQQRRSALEFEIDGVVIKVNRIAQQLNL
GFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN
ADEIARLGVKVGDSIIIRRAGDVIPQIVAVVADKRPDNAADIVFPTQCPVCDSLVERIEG
EAVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTAS
AMTMLERMGMKSATKLVAAIEVAKQTTFSRFLYALGIREVGEATAANLAAYFKTLPALKA
ANAEAFIKVDDVGTIVAAHLEHFFAQPHNIEVIDKLIEAGVSWPVIEEVAEENLSLKGQT
WVLTGTLTELNRNDAKAQLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQDLGIKVIDE
AELIAILS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcacgctattgaactcgaaatcgcagagctaaccgatcaattaaatcagcataattat
cattattatgttgatgataatcctactattcctgatgcagaatatgaccgattacttaaa
cgtctaattgagcttgaaactgagcacccagcgttgttgaaggcagattctccaacccag
cgcgttggcggtgaggcattagcaaagtttgagcaaataactcacttaaagccgatgtta
agtcttgataacgtgttcgacgagtcagagttcagtgcctttcattctcgcatcaccgat
agggttggtacagagctaacttattgctgtgagccaaaacttgatggtttagcggtgagt
attttataccgtgatggcatttttgaacgcgccgcaactcgtggcgatgggcaaacgggt
gaaaacatcactgagaatgtgcgtacgattaagtcgattccgttaaagcttcggggagac
aatttcccacctttagttgaagtgcgtggagaagtcattatgccgcataaggcatttgat
gcactcaacaaacgagctcaggcaaaaggcgaaaaattatttgttaacccacgtaatgct
gctgcgggtagtttgcgccaacttgatagcaaaataacagccagtcgcgcattaggcttt
tatgcttatgcattaggcgtcgtcgaacccgaaacgtgggaactcgctgacagccattac
ggccagctagcgcaattacgttcttggggcgtccccgttagccaagaggtaaaagagtgc
gctggtgtcgctcaagtgatggagtattataatgatattcagcagcgccgcagtgctcta
gagtttgaaattgatggcgttgtgataaaggttaaccgtattgcgcagcagttaaatctt
ggatttgtggctaaagcaccacgctgggctaccgcctttaaatttccggctcaagaagag
atgaccttgttagagggcgttgactttcaagtcgggcgcaccggtgctgttacgccagtt
gcacgtttaaagccagtttttgtgggcggggtgacagtatcgaatgcgactttgcataat
gctgatgaaattgcacggcttggcgttaaagtcggtgacagcattattattcgccgtgct
ggcgatgttattccgcaaattgtagccgttgtcgctgataagcgccctgacaatgccgct
gacatagtttttccgacacaatgccctgtgtgcgacagtttagtcgagcgtattgaaggt
gaagccgttgctcgctgtacaggtggactattttgtgaagcccagcgtaaagaagcaata
aagcattttgcttcaagaaaagcgcttgatatagacggtatgggcgacaaagtcgttgag
cagctcattgataaagagttagtacaaagccctgccgatctatttaaattgaccgcttca
gctatgaccatgttggaacgtatggggatgaagtcggcgacaaaattggttgcggcaatt
gaagtggctaagcaaaccacgttttcacgttttttgtacgcgttagggatccgtgaagtg
ggcgaggccacggctgccaacttggcggcatacttcaaaacgttgccagcacttaaagcg
gcgaatgcagaagcgtttattaaagttgatgacgttggaaccattgttgctgcacattta
gagcacttttttgctcaaccgcacaacattgaagtaattgataaactgattgaagctggt
gtgagttggcctgttattgaagaggtggctgaagaaaatttatcactcaaaggccaaaca
tgggtgttaaccggaacgttaaccgagcttaaccgcaatgacgctaaagcgcagttacaa
gcattaggtgccaaggttgcaggtagtgtgtcgaaaaataccgactgtttagtggctggc
gcagccgcaggctctaaattaactaaagcccaagatttagggataaaagtgattgatgaa
gctgagctgattgctattttgtcgtaa
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integrated database retrieval system
