Shewanella youngdeokensis: RGE70_16995
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Entry
RGE70_16995 CDS
T10660
Symbol
lpxC
Name
(GenBank) UDP-3-O-acyl-N-acetylglucosamine deacetylase
KO
K02535
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:
3.5.1.108
]
Organism
syou Shewanella youngdeokensis
Pathway
syou00540
Lipopolysaccharide biosynthesis
syou01100
Metabolic pathways
Module
syou_M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
RGE70_16995 (lpxC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
syou01005
]
RGE70_16995 (lpxC)
Enzymes [BR:
syou01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.108 UDP-3-O-acyl-N-acetylglucosamine deacetylase
RGE70_16995 (lpxC)
Lipopolysaccharide biosynthesis proteins [BR:
syou01005
]
Lipid A
RGE70_16995 (lpxC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LpxC
Motif
Other DBs
NCBI-ProteinID:
WOT04970
UniProt:
A0ABZ0JXF0
LinkDB
All DBs
Position
complement(3979257..3980177)
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AA seq
306 aa
AA seq
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MIFQRTVKEIVKTTGVGLHSGNKVTLIVKPAPVNTGIVLVRTDLSPAVEIPAVAEQVRET
TMCTALVNDDGVRVSTIEHLFAALAGLGIDNAIIEVDAPEIPIMDGSASPFVFLLQSVGI
QEQAAAKKYIKITKPIRVEDGDKWAELKPFKGFRVNFAIDFNHPEIARSQQHMVMDFSSS
AFIKDISRARTFGFMRDIEYLRANNLALGGSMENAVVLDEYRVLNPDGLRYEDEFVKHKI
LDAFGDLYVAGHAIVGEFCAFKTGHALNNQLVRAMLAQQDAWEIVSFEEEADAPVSFSVP
AGAVFA
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcaaagaacagtcaaagaaatagttaaaactactggtgttggattgcattcc
ggcaacaaggtaactttgatcgtcaaacccgcaccagttaataccggcattgtactagtt
cgtaccgatttgtctccagcggttgaaataccagctgttgcagagcaagtacgcgaaacg
acaatgtgcactgctttggtcaatgacgatggtgttcgtgtttcaacaattgagcatctg
tttgcagcacttgctggtctaggtatcgataacgctattattgaagttgatgcacctgaa
attccgattatggatggcagtgccagcccatttgtatttttactgcaatcagtagggatc
caagagcaagctgcggctaagaagtacatcaaaatcaccaagcctattcgtgttgaagac
ggtgacaagtgggcagagttgaagccttttaaaggttttagagttaattttgcaattgac
tttaatcatcccgaaattgcccgcagccagcagcatatggtaatggatttttcatcttca
gcctttatcaaggatatcagtcgagcaagaacctttggttttatgcgcgacattgaatac
ttgagagccaataatcttgcgctaggtggcagcatggaaaatgccgtagtacttgacgaa
tatcgcgtcctcaaccccgatggcctgcgttatgaggatgagttcgttaagcacaagatc
cttgatgcttttggtgacctatatgtagcgggtcacgctatagttggtgagttctgcgca
tttaaaacaggacacgcgttaaacaatcagttagtccgtgcgatgcttgctcagcaagat
gcatgggagattgttagctttgaagaagaagccgacgcaccagtaagcttttcggtacca
gcaggtgcggtattcgcttaa
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