Synechocystis sp. PCC 6803 PCC-N: SYNPCCN_0010
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Entry
SYNPCCN_0010 CDS
T01778
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sys
Synechocystis sp. PCC 6803 PCC-N
Pathway
sys03030
DNA replication
sys03410
Base excision repair
sys03420
Nucleotide excision repair
sys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYNPCCN_0010 (ligA)
03410 Base excision repair
SYNPCCN_0010 (ligA)
03420 Nucleotide excision repair
SYNPCCN_0010 (ligA)
03430 Mismatch repair
SYNPCCN_0010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sys03032
]
SYNPCCN_0010 (ligA)
03400 DNA repair and recombination proteins [BR:
sys03400
]
SYNPCCN_0010 (ligA)
Enzymes [BR:
sys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SYNPCCN_0010 (ligA)
DNA replication proteins [BR:
sys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SYNPCCN_0010 (ligA)
DNA repair and recombination proteins [BR:
sys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SYNPCCN_0010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SYNPCCN_0010 (ligA)
MMR (mismatch excision repair)
DNA ligase
SYNPCCN_0010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SYNPCCN_0010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAL30927
LinkDB
All DBs
Position
complement(10622..12631)
Genome browser
AA seq
669 aa
AA seq
DB search
MTTPDRLLQLRQQLQKASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELITPDSPTQR
VGEQPASQFRSVAHNIPLYSLENAFNVQELQQWQERWQRIAPTIEKAEYVCELKIDGSAI
ALTYENGLLVRGVTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEF
NRINHEREAQGESLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKIQSQWQ
ALEYLKKAGFMVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELG
FTQKFPRWAIALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQ
DRIQELDIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLEE
AVIRCVNSSCSAILQGSLIHWASRNALDIQGLGEKVVITLLENRLVNSVADLYGLQVEQL
LGLERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVGQVNAKLLSQQFPTVEKLSQAS
IPDLEGVYGIGPEIAEAVVNWFRNPGNQQLIQDLEELGLVLANQGIDQTKTDSGKLKGKT
FVLTGTLPNLSRLEAQELIEQSGGKVTSSVSTKTDYVLLGDKPGSKAAKAESLGIKLLSE
AEFLQLLEP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccacccccgatcgcctattgcaactgcgccaacaactccaaaaagccagctacgcc
tactatgtactggatgcgccggtcatggaggacagcgtttacgaccagctttaccgggaa
ctgcaaaggctagaggcagaaaatccggagttaattacccccgacagtccgacccaacga
gtgggggagcaaccggccagtcagttccgctctgttgcccataatattcccctctacagc
ctagaaaatgcctttaatgtgcaggaattacaacagtggcaagaacgctggcaacgcatt
gccccaaccatcgaaaaggctgaatacgtctgtgagctaaaaattgacggctcggcgatc
gccctgacctatgagaatggtttgttggtgcggggggtaactaggggagacggcaccacc
ggggaagaaattagccaaaatattaaaaccattcgatccattcccgtgaagcttaattta
gataatcctcccccaacggtggaagtgaggggggaagcctttttgcccctagaagaattt
aatcgtattaatcacgagcgggaagcccagggagaaagcttatttgccaatccccgtaat
gccgccgccggtactctccgtcagttggaccccaaaatagtccaccaaagacgcttacaa
ttttttgcctatacgctccatttaccagggcaagaagacaaaatccaaagtcaatggcaa
gctttggaatatctcaaaaaagctggctttatggttaatccccattgtcagctctgtaaa
ggtttagatgaagtagtggcatattttgaagactgggaaggcgcccggcaacgcttaccc
tatatgaccgacggggtggtggtgaaaattaatcagtatcccctgcaaagagagttaggc
ttcacccaaaaatttccccgctgggcgatcgccttaaaatatcctgccgaagaaaccccc
accgtagtcaaagccattgaagttaatgtgggccgcaccggcgcagtcacccccctagcc
gtgatggagccagtacagttagccggcaccacggtacaaagagccactctgcataaccaa
gaccgcatccaagaattagatatccgggtgggggacacggtaattattcgcaaagcaggg
gaaattatccccgaagtggtccgggtaatgacagaattgcgcccggaaaacaccaccccc
tacatttttccttcccattgcccggcctgtggttcccccttggtccgacccctggaagaa
gctgtcatccgttgtgtcaatagttcctgctccgctattttgcaaggcagtttaattcac
tgggctagccgcaacgctttggatatccagggtttgggggaaaaagttgtgattacgctc
ttggaaaatcggttagtcaactccgttgctgatttatatggtttacaggtggagcagttg
ttaggattagaacgttttgcccaaaaatccgccgaaaaattaattgccgccattgaagtt
agcaaaagccaaccctggagccgcattttatttggcttaggtatccgccatgtgggccag
gtaaatgccaaattactcagccaacagtttcccaccgtggaaaaactaagccaagccagc
attcccgacctggaaggagtctatggcattggcccagaaattgccgaagccgtggttaat
tggttcaggaaccccggtaatcaacaattaattcaagatttagaggagttgggtttagta
ttggcaaaccaagggattgaccagaccaaaactgacagcggcaagttaaagggcaaaacc
tttgtgttaaccgggactttgcccaaccttagtcgcctagaagctcaggaattaattgaa
cagagcggcggtaaagtaaccagcagtgtaagtaccaaaactgattatgttctcttggga
gataaaccaggaagtaaggccgccaaggcggaaagtttgggcatcaagttactatctgag
gcggagtttttacaattgttggagccgtag
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